HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:387.7 nTPM
HPA Brain:682.6 nTPM
GTEx:387.7 nTPM
FANTOM5:512.8 Scaled Tags Per Million
Pig:620.8 nTPM
Mouse:761.5 nTPM
Allen mouse:25.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA015649Antibody HPA015650
Glial cells Not detectedHigh
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 682.6
Sample id Sample description nTPM
Hippocampus
nTPM: 454.8
1898 Male, age 80, left hemisphere 706.1
1855 Male, age 76, left hemisphere 510.4
2621 Female, age 67, right hemisphere 500.9
1911 Female, age 85, right hemisphere 360.2
2148 Female, age 91, left hemisphere 345.5
2529 Female, age 94, left hemisphere 305.5
Dentate gyrus
nTPM: 468.5
1927 Female, age 91, both hemispheres 600.3
2010 Male, age 76, both hemispheres 562.2
2530 Female, age 94, left hemisphere 473.9
2246 Female, age 85, both hemispheres 455.5
2528 Male, age 74, both hemispheres 393.1
2531 Female, age 67, both hemispheres 325.9
Entorhinal gyrus
nTPM: 488.0
2764 Male, age 80, right hemisphere 609.5
1938 Female, age 85, left hemisphere 597.0
1787 Male, age 76, left hemisphere 537.7
2613 Female, age 94, left hemisphere 515.7
2117 Female, age 91, right hemisphere 375.8
2686 Male, age 75, right hemisphere 292.1
Hippocampus, CA1
nTPM: 540.6
2749 Male, age 80, left hemisphere 867.5
1873 Female, age 85, both hemispheres 575.3
2045 Male, age 76, both hemispheres 484.1
2527 Male, age 74, both hemispheres 408.8
2082 Female, age 91, right hemisphere 367.3
Hippocampus, CA2
nTPM: 527.0
1892 Male, age 76, both hemispheres 782.4
1963 Male, age 80, left hemisphere 664.2
1940 Female, age 85, left hemisphere 484.3
2249 Male, age 74, both hemispheres 443.9
2437 Female, age 94, left hemisphere 428.9
2113 Female, age 91, right hemisphere 358.5
Hippocampus, CA3
nTPM: 463.8
1867 Male, age 76, both hemispheres 591.1
2137 Male, age 80, left hemisphere 588.2
2620 Female, age 94, left hemisphere 476.2
1891 Female, age 85, both hemispheres 456.4
2436 Male, age 74, both hemispheres 394.2
2861 Female, age 67, both hemispheres 276.8
Parahippocampal cortex
nTPM: 499.6
1850 Male, age 80, both hemispheres 745.4
1933 Female, age 85, both hemispheres 592.5
1990 Female, age 91, right hemisphere 548.2
2250 Female, age 67, right hemisphere 531.1
2693 Female, age 94, both hemispheres 507.0
2245 Female, age 91, both hemispheres 499.8
2532 Female, age 72, left hemisphere 481.2
2018 Male, age 76, both hemispheres 436.0
2622 Female, age 67, right hemisphere 331.7
2692 Male, age 74, both hemispheres 323.4
Perirhinal gyrus
nTPM: 682.6
1847 Female, age 91, left hemisphere 806.5
1794 Male, age 80, right hemisphere 736.3
1841 Female, age 85, right hemisphere 701.2
2521 Female, age 94, right hemisphere 612.0
2848 Male, age 76, right hemisphere 556.9
Subiculum
nTPM: 438.3
1977 Female, age 85, both hemispheres 556.3
1901 Male, age 80, both hemispheres 544.6
2438 Female, age 94, left hemisphere 440.8
2042 Male, age 76, both hemispheres 390.1
2619 Male, age 74, both hemispheres 385.0
2729 Female, age 91, right hemisphere 313.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 387.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 387.7
Samples: 255

Max nTPM: 1114.2
Min nTPM: 129.8
Std nTPM: 162.5
Median nTPM: 353.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1114.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 903.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 806.8
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 793.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 789.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 778.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 760.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 759.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 749.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 721.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 711.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 512.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 512.8
FF:10169-103B7 60 years, female 568.1
FF:10153-102I9 76 years, female 457.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 620.8
Pig sample Sample description nTPM
Subiculum
nTPM: 558.0
Samples: 4

Max nTPM: 673.8
Min nTPM: 485.3
Sample A Female 673.8
Sample B Female 519.5
Sample C Male 553.2
Sample D Male 485.3
Dorsal hippocampus
nTPM: 620.8
Samples: 4

Max nTPM: 786.3
Min nTPM: 440.0
Sample A Female 786.3
Sample B Female 699.1
Sample C Male 557.7
Sample D Male 440.0
Entorhinal cortex
nTPM: 563.2
Samples: 4

Max nTPM: 579.4
Min nTPM: 526.8
Sample A Female 567.5
Sample B Female 579.0
Sample C Male 579.4
Sample D Male 526.8
Ventral hippocampus
nTPM: 590.9
Samples: 4

Max nTPM: 675.4
Min nTPM: 422.4
Sample A Female 675.4
Sample B Female 422.4
Sample C Male 649.9
Sample D Male 615.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 761.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 761.5
Samples: 4

Max nTPM: 877.9
Min nTPM: 711.5
Sample A Male 711.5
Sample B Male 739.3
Sample C Female 717.2
Sample D Female 877.9
Hippocampal formation
nTPM: 740.9
Samples: 4

Max nTPM: 801.7
Min nTPM: 678.5
Sample A Male 726.2
Sample B Male 757.0
Sample C Female 801.7
Sample D Female 678.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 25.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 25.2
83161 Antisense, RP_040407_01_G06, Mouse strain C57BL/6J (56 days, male) 25.6
70812889 Antisense, RP_050712_02_G12, Mouse strain C57BL/6J (56 days, male) 24.8

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