We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RTN3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RTN3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:373.9 nTPM
HPA Brain:486.0 nTPM
GTEx:373.9 nTPM
FANTOM5:419.0 Scaled Tags Per Million
Pig:556.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

486.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 400.3
1981 Female, age 72, midline 486.5
2194 Female, age 79, both hemispheres 416.2
2048 Male, age 55, midline 380.7
2816 Male, age 47, midline 368.5
2565 Male, age 75, midline 349.6
Cervical spinal cord, dorsal horn
nTPM: 486.0
2296 Male, age 66, both hemispheres 692.1
2173 Female, age 72, unknown 605.3
2069 Male, age 47, both hemispheres 491.7
2297 Male, age 75, both hemispheres 413.3
1877 Male, age 55, unknown 399.6
2721 Male, age 90, both hemispheres 314.1
Cervical spinal cord, ventral horn
nTPM: 378.7
2068 Male, age 55, unknown 445.9
2098 Female, age 72, unknown 430.3
2820 Female, age 79, both hemispheres 417.2
2480 Male, age 75, both hemispheres 364.7
2295 Male, age 66, both hemispheres 312.4
2809 Male, age 90, both hemispheres 301.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 373.9
Samples: 204

Max nTPM: 604.6
Min nTPM: 143.7
Std nTPM: 94.9
Median nTPM: 369.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 604.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 589.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 585.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 570.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 568.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 565.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 559.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 554.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 553.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 552.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 550.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 547.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 535.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 524.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 514.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 513.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 506.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 506.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 504.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 500.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 499.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 498.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 497.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 494.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 486.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 484.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 484.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 484.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 481.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 474.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 473.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 472.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 468.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 467.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 466.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 462.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 461.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 461.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 459.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 458.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 456.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 454.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 450.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 449.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 449.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 442.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 440.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 437.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 435.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 435.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 434.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 431.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 430.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 430.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 429.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 428.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 428.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 427.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 427.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 425.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 424.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 423.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 420.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 420.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 419.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 418.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 418.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 416.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 415.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 414.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 414.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 413.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 412.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 411.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 409.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 408.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 407.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 402.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 400.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 399.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 398.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 396.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 393.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 392.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 392.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 390.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 388.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 387.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 385.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 383.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 379.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 379.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 378.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 377.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 375.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 375.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 374.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 374.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 374.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 371.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 369.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 369.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 369.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 368.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 365.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 365.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 362.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 362.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 360.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 358.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 356.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 356.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 356.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 355.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 353.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 353.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 353.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 352.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 351.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 351.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 350.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 349.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 349.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 348.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 347.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 347.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 345.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 344.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 343.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 342.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 342.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 341.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 341.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 341.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 339.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 339.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 337.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 336.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 334.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 334.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 331.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 331.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 327.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 327.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 324.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 323.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 322.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 321.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 318.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 316.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 316.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 315.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 315.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 315.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 312.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 310.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 307.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 305.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 304.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 303.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 300.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 296.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 293.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 293.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 293.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 291.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 283.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 283.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 282.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 280.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 277.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 276.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 274.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 273.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 269.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 268.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 268.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 262.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 261.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 259.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 258.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 257.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 254.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 251.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 247.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 246.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 246.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 238.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 221.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 218.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 216.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 215.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 209.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 207.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 206.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 205.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 204.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 198.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 197.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 186.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 179.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 178.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 172.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 143.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

419.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 419.0
FF:10159-103A6 76 years, female 424.7
FF:10181-103D1 60 years, female 413.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

556.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 416.1
Samples: 4

Max nTPM: 540.5
Min nTPM: 301.9
Sample A Female 540.5
Sample B Female 369.7
Sample C Male 301.9
Sample D Male 452.2
Ventral spinal cord
nTPM: 556.6
Samples: 4

Max nTPM: 634.7
Min nTPM: 496.6
Sample A Female 634.7
Sample B Female 569.7
Sample C Male 525.2
Sample D Male 496.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo