MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:348.5 nTPM
HPA Brain:452.8 nTPM
GTEx:348.5 nTPM
FANTOM5:565.2 Scaled Tags Per Million
Pig:520.1 nTPM
Mouse:783.3 nTPM
Allen mouse:23.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 452.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 382.9
2411 Female, age 72, unknown 488.1
1827 Male, age 72, unknown 453.6
1870 Female, age 42, unknown 425.9
2019 Male, age 18, unknown 389.3
1833 Male, age 53, unknown 373.7
2666 Male, age 74, left hemisphere 366.9
2219 Male, age 76, both hemispheres 362.9
2828 Female, age 72, unknown 346.1
1830 Male, age 51, unknown 340.4
2586 Male, age 75, left hemisphere 282.5
Dorsal raphe nucleus
nTPM: 415.7
2298 Female, age 72, unknown 540.5
2750 Male, age 76, both hemispheres 414.4
2047 Male, age 72, unknown 403.1
1828 Male, age 53, unknown 402.8
2016 Female, age 72, unknown 318.0
Inferior colliculus
nTPM: 375.9
2097 Female, age 72, unknown 443.0
1848 Female, age 42, unknown 388.1
1890 Male, age 53, unknown 337.4
2849 Male, age 72, unknown 335.1
Median raphe nucleus
nTPM: 419.8
2220 Male, age 76, midline 419.8
Periaquaductal grey, anterior
nTPM: 374.8
1947 Male, age 18, unknown 417.1
1795 Male, age 51, unknown 383.9
2502 Female, age 75, unknown 323.5
Periaquaductal grey, dorsal
nTPM: 334.1
1840 Male, age 53, unknown 349.3
1831 Male, age 72, unknown 335.7
2850 Male, age 76, both hemispheres 330.3
2464 Female, age 72, unknown 320.9
Periaquaductal grey, lateral
nTPM: 345.8
2272 Male, age 74, both hemispheres 397.0
2053 Male, age 18, unknown 355.5
2140 Male, age 76, both hemispheres 284.8
Pretectal area
nTPM: 427.5
2007 Male, age 72, unknown 507.6
1816 Male, age 51, unknown 497.3
1944 Female, age 72, unknown 494.8
1817 Female, age 42, unknown 479.0
2667 Female, age 75, unknown 453.2
2273 Male, age 74, both hemispheres 447.5
1815 Male, age 53, unknown 439.5
2224 Female, age 72, unknown 423.9
2825 Male, age 18, unknown 353.6
2407 Male, age 75, both hemispheres 309.4
2316 Male, age 76, right hemisphere 296.3
Red nucleus
nTPM: 342.3
1821 Female, age 72, unknown 493.2
1954 Female, age 42, unknown 370.2
2785 Male, age 18, unknown 359.3
2725 Female, age 75, unknown 349.4
2503 Female, age 72, unknown 335.3
1865 Male, age 51, unknown 333.2
1904 Male, age 53, unknown 327.0
2769 Male, age 72, unknown 323.4
2823 Male, age 76, right hemisphere 321.8
2227 Male, age 72, unknown 317.7
2588 Male, age 74, left hemisphere 296.8
2584 Male, age 75, left hemisphere 279.6
Substantia nigra
nTPM: 452.8
1916 Female, age 42, unknown 627.8
1941 Male, age 53, unknown 590.1
2241 Male, age 72, unknown 525.2
1889 Female, age 72, unknown 497.2
1851 Male, age 51, unknown 489.8
2409 Female, age 72, unknown 443.9
2699 Male, age 18, unknown 385.9
2583 Male, age 75, right hemisphere 354.9
2590 Female, age 75, unknown 325.2
2665 Male, age 74, both hemispheres 288.2
Superior colliculus
nTPM: 381.9
2668 Female, age 75, unknown 526.7
2587 Male, age 74, left hemisphere 434.3
1895 Male, age 76, right hemisphere 415.7
2261 Male, age 18, unknown 402.5
1796 Male, age 53, unknown 394.8
2087 Female, age 72, unknown 393.2
1839 Male, age 51, unknown 365.1
1913 Female, age 42, unknown 329.4
2664 Male, age 75, both hemispheres 283.6
1995 Male, age 72, unknown 274.0
Ventral tegmental area
nTPM: 423.0
2410 Female, age 72, unknown 526.5
2218 Male, age 76, both hemispheres 472.5
1915 Female, age 42, unknown 470.9
2223 Female, age 72, unknown 390.8
1942 Male, age 51, unknown 357.6
2021 Male, age 53, unknown 319.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 348.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 348.5
Samples: 183

Max nTPM: 1194.3
Min nTPM: 110.7
Std nTPM: 156.6
Median nTPM: 305.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1194.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 985.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 811.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 778.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 761.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 736.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 706.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 673.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 667.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 657.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 628.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 565.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 565.2
FF:10158-103A5 76 years, female 565.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 520.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 483.5
Samples: 4

Max nTPM: 711.5
Min nTPM: 290.0
Sample A Female 711.5
Sample B Female 350.1
Sample C Male 582.4
Sample D Male 290.0
Midbrain
nTPM: 513.2
Samples: 4

Max nTPM: 652.1
Min nTPM: 419.8
Sample A Female 484.3
Sample B Female 419.8
Sample C Male 652.1
Sample D Male 496.4
Periaqueductal gray
nTPM: 388.0
Samples: 3

Max nTPM: 461.2
Min nTPM: 328.0
Sample B Female 374.9
Sample C Male 461.2
Sample D Male 328.0
Superior colliculi
nTPM: 520.1
Samples: 4

Max nTPM: 673.7
Min nTPM: 320.4
Sample A Female 609.7
Sample B Female 320.4
Sample C Male 673.7
Sample D Male 476.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 783.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 783.3
Samples: 4

Max nTPM: 840.3
Min nTPM: 717.0
Sample A Male 717.0
Sample B Male 806.0
Sample C Female 840.3
Sample D Female 769.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 23.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.1
83161 Antisense, RP_040407_01_G06, Mouse strain C57BL/6J (56 days, male) 23.1
70812889 Antisense, RP_050712_02_G12, Mouse strain C57BL/6J (56 days, male) 23.0

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