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  • RTN3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:364.7 nTPM
HPA Brain:395.4 nTPM
GTEx:364.7 nTPM
FANTOM5:534.4 Scaled Tags Per Million
Pig:410.7 nTPM
Mouse:679.0 nTPM
Allen mouse:27.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

395.4
Sample id Sample description nTPM
Amygdala
nTPM: 391.9
2814 Male, age 76, right hemisphere 465.3
1987 Female, age 91, left hemisphere 427.7
2514 Male, age 75, right hemisphere 427.5
2517 Female, age 94, left hemisphere 354.2
2695 Female, age 67, right hemisphere 284.9
Basal amygdala
nTPM: 380.7
2110 Male, age 80, left hemisphere 477.5
2243 Female, age 91, right hemisphere 444.9
1955 Male, age 76, both hemispheres 420.0
2685 Female, age 94, left hemisphere 400.3
2609 Male, age 75, right hemisphere 358.6
2827 Female, age 67, right hemisphere 182.9
Central amygdala
nTPM: 379.9
2239 Male, age 80, left hemisphere 456.6
1905 Male, age 76, both hemispheres 405.7
2826 Female, age 94, left hemisphere 360.6
2701 Female, age 91, right hemisphere 347.1
2515 Male, age 75, right hemisphere 329.3
Corticomedial amygdala
nTPM: 395.4
2829 Male, age 80, left hemisphere 545.8
2242 Female, age 91, right hemisphere 425.0
2429 Female, age 94, left hemisphere 424.9
2240 Male, age 76, both hemispheres 392.1
2428 Male, age 75, right hemisphere 377.6
2535 Female, age 67, right hemisphere 206.6
Lateral amygdala
nTPM: 340.3
1883 Male, age 76, both hemispheres 481.3
2534 Female, age 94, left hemisphere 449.3
2516 Male, age 75, right hemisphere 342.3
2256 Male, age 80, left hemisphere 313.9
2255 Female, age 91, right hemisphere 289.4
2830 Female, age 67, right hemisphere 165.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

364.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 364.7
Samples: 181

Max nTPM: 869.5
Min nTPM: 140.9
Std nTPM: 128.6
Median nTPM: 346.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 869.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 807.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 700.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 694.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 680.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 650.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 647.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 614.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 586.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 580.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 579.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 573.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 570.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 553.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 553.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 550.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 539.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 538.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 538.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 537.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 536.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 522.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 522.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 522.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 516.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 510.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 507.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 506.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 493.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 485.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 479.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 463.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 462.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 460.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 455.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 455.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 454.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 451.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 449.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 449.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 447.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 447.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 443.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 442.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 434.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 431.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 430.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 429.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 426.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 423.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 420.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 420.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 419.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 418.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 416.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 415.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 415.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 411.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 408.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 406.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 401.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 398.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 396.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 396.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 394.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 394.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 393.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 392.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 391.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 391.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 391.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 388.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 386.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 385.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 383.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 377.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 375.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 375.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 371.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 368.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 363.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 362.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 359.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 357.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 353.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 351.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 351.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 349.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 348.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 348.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 346.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 343.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 341.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 340.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 339.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 339.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 337.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 336.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 332.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 331.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 329.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 329.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 329.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 328.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 328.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 320.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 319.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 317.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 317.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 316.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 315.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 314.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 309.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 307.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 306.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 306.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 304.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 302.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 299.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 298.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 298.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 298.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 293.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 292.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 292.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 283.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 281.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 280.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 279.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 279.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 278.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 277.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 277.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 277.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 277.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 270.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 265.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 263.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 263.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 262.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 256.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 254.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 250.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 250.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 249.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 248.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 248.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 248.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 237.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 235.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 233.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 233.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 233.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 233.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 227.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 227.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 226.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 225.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 224.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 223.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 221.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 219.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 218.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 215.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 213.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 212.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 211.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 206.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 205.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 200.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 199.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 197.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 192.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 191.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 191.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 186.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 181.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 160.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 159.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 157.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 140.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

534.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 534.4
FF:10151-102I7 76 years, female 534.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

410.7
Pig sample Sample description nTPM
Amygdala
nTPM: 410.7
Samples: 4

Max nTPM: 575.7
Min nTPM: 322.0
Sample A Female 575.7
Sample B Female 322.0
Sample C Male 351.3
Sample D Male 393.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

679.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 679.0
Samples: 4

Max nTPM: 726.7
Min nTPM: 634.2
Sample A Male 726.7
Sample B Male 634.2
Sample C Female 678.1
Sample D Female 676.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.5
83161 Antisense, RP_040407_01_G06, Mouse strain C57BL/6J (56 days, male) 27.5
70812889 Antisense, RP_050712_02_G12, Mouse strain C57BL/6J (56 days, male) 27.5

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