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BETA
  • SUMMARY

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  • BRAIN

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  • RPS15A
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:3147.0 nTPM
Monaco:657.6 nTPM
Schmiedel:110.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

3147.0
HPA sample nTPM
Memory B-cell
nTPM: 3147.0
Samples: 6

Max nTPM: 3588.9
Min nTPM: 2501.8
P10809_1017 2501.8
P10809_1025 3588.9
P10809_1044 3351.1
P10809_1063 3146.5
P10809_1092 2864.1
P10809_1105 3429.7
Naive B-cell
nTPM: 2603.8
Samples: 6

Max nTPM: 3809.3
Min nTPM: 1946.4
P10809_1011 1946.4
P10809_1029 2291.1
P10809_1048 3809.3
P10809_1067 2529.1
P10809_1091 2270.6
P10809_1104 2776.5

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

657.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 497.1
Samples: 4

Max nTPM: 751.1
Min nTPM: 151.5
RHH5310_R3677 383.8
RHH5218_R3590 151.5
RHH5247_R3619 751.1
RHH5276_R3648 701.9
Naive B-cell
nTPM: 433.2
Samples: 4

Max nTPM: 795.9
Min nTPM: 154.8
RHH5308_R3675 402.5
RHH5216_R3588 154.8
RHH5245_R3617 795.9
RHH5274_R3646 379.4
Non-switched memory B-cell
nTPM: 349.5
Samples: 4

Max nTPM: 593.1
Min nTPM: 138.0
RHH5309_R3676 481.2
RHH5217_R3589 185.6
RHH5246_R3618 138.0
RHH5275_R3647 593.1
Plasmablast
nTPM: 657.6
Samples: 4

Max nTPM: 889.8
Min nTPM: 339.0
RHH5312_R3679 889.8
RHH5220_R3592 339.0
RHH5249_R3621 644.8
RHH5278_R3650 756.6
Switched memory B-cell
nTPM: 362.9
Samples: 4

Max nTPM: 559.6
Min nTPM: 233.0
RHH5311_R3678 374.5
RHH5219_R3591 284.4
RHH5248_R3620 233.0
RHH5277_R3649 559.6

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

110.9
Schmiedel sample id TPM
Naive B-cell
TPM: 110.9
Samples: 91

Max TPM: 139.6
Min TPM: 39.1
B_CELL_NAIVE_1 139.6
B_CELL_NAIVE_2 139.1
B_CELL_NAIVE_3 138.8
B_CELL_NAIVE_4 135.5
B_CELL_NAIVE_5 134.0
B_CELL_NAIVE_6 131.7
B_CELL_NAIVE_7 131.2
B_CELL_NAIVE_8 130.8
B_CELL_NAIVE_9 129.6
B_CELL_NAIVE_10 127.6
B_CELL_NAIVE_11 127.5
B_CELL_NAIVE_12 126.9
B_CELL_NAIVE_13 126.5
B_CELL_NAIVE_14 125.4
B_CELL_NAIVE_15 125.3
B_CELL_NAIVE_16 125.3
B_CELL_NAIVE_17 125.1
B_CELL_NAIVE_18 124.6
B_CELL_NAIVE_19 124.6
B_CELL_NAIVE_20 124.0
B_CELL_NAIVE_21 123.0
B_CELL_NAIVE_22 122.5
B_CELL_NAIVE_23 122.3
B_CELL_NAIVE_24 122.2
B_CELL_NAIVE_25 120.9
B_CELL_NAIVE_26 119.6
B_CELL_NAIVE_27 119.0
B_CELL_NAIVE_28 118.8
B_CELL_NAIVE_29 118.4
B_CELL_NAIVE_30 117.1
B_CELL_NAIVE_31 117.0
B_CELL_NAIVE_32 116.4
B_CELL_NAIVE_33 115.5
B_CELL_NAIVE_34 114.7
B_CELL_NAIVE_35 113.9
B_CELL_NAIVE_36 113.9
B_CELL_NAIVE_37 113.5
B_CELL_NAIVE_38 113.4
B_CELL_NAIVE_39 112.5
B_CELL_NAIVE_40 112.4
B_CELL_NAIVE_41 112.4
B_CELL_NAIVE_42 111.7
B_CELL_NAIVE_43 111.2
B_CELL_NAIVE_44 111.1
B_CELL_NAIVE_45 110.4
B_CELL_NAIVE_46 110.3
B_CELL_NAIVE_47 110.0
B_CELL_NAIVE_48 109.8
B_CELL_NAIVE_49 109.8
B_CELL_NAIVE_50 109.4
B_CELL_NAIVE_51 109.3
B_CELL_NAIVE_52 108.5
B_CELL_NAIVE_53 108.3
B_CELL_NAIVE_54 107.9
B_CELL_NAIVE_55 107.7
B_CELL_NAIVE_56 107.0
B_CELL_NAIVE_57 106.9
B_CELL_NAIVE_58 106.9
B_CELL_NAIVE_59 106.5
B_CELL_NAIVE_60 106.3
B_CELL_NAIVE_61 105.6
B_CELL_NAIVE_62 105.1
B_CELL_NAIVE_63 105.1
B_CELL_NAIVE_64 104.8
B_CELL_NAIVE_65 104.4
B_CELL_NAIVE_66 103.2
B_CELL_NAIVE_67 103.1
B_CELL_NAIVE_68 102.7
B_CELL_NAIVE_69 102.6
B_CELL_NAIVE_70 102.5
B_CELL_NAIVE_71 102.5
B_CELL_NAIVE_72 102.5
B_CELL_NAIVE_73 102.1
B_CELL_NAIVE_74 102.1
B_CELL_NAIVE_75 101.7
B_CELL_NAIVE_76 100.9
B_CELL_NAIVE_77 100.7
B_CELL_NAIVE_78 100.6
B_CELL_NAIVE_79 100.0
B_CELL_NAIVE_80 99.3
B_CELL_NAIVE_81 93.9
B_CELL_NAIVE_82 92.3
B_CELL_NAIVE_83 91.3
B_CELL_NAIVE_84 91.2
B_CELL_NAIVE_85 90.1
B_CELL_NAIVE_86 89.0
B_CELL_NAIVE_87 87.3
B_CELL_NAIVE_88 85.5
B_CELL_NAIVE_89 82.4
B_CELL_NAIVE_90 77.6
B_CELL_NAIVE_91 39.1
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