A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3147.0
nTPM
Monaco:
657.6
nTPM
Schmiedel:
110.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3147.0
HPA sample
nTPM
Memory B-cell nTPM: 3147.0
Samples: 6
Max nTPM: 3588.9
Min nTPM: 2501.8
P10809_1017
2501.8
P10809_1025
3588.9
P10809_1044
3351.1
P10809_1063
3146.5
P10809_1092
2864.1
P10809_1105
3429.7
Naive B-cell nTPM: 2603.8
Samples: 6
Max nTPM: 3809.3
Min nTPM: 1946.4
P10809_1011
1946.4
P10809_1029
2291.1
P10809_1048
3809.3
P10809_1067
2529.1
P10809_1091
2270.6
P10809_1104
2776.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
657.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 497.1
Samples: 4
Max nTPM: 751.1
Min nTPM: 151.5
RHH5310_R3677
383.8
RHH5218_R3590
151.5
RHH5247_R3619
751.1
RHH5276_R3648
701.9
Naive B-cell nTPM: 433.2
Samples: 4
Max nTPM: 795.9
Min nTPM: 154.8
RHH5308_R3675
402.5
RHH5216_R3588
154.8
RHH5245_R3617
795.9
RHH5274_R3646
379.4
Non-switched memory B-cell nTPM: 349.5
Samples: 4
Max nTPM: 593.1
Min nTPM: 138.0
RHH5309_R3676
481.2
RHH5217_R3589
185.6
RHH5246_R3618
138.0
RHH5275_R3647
593.1
Plasmablast nTPM: 657.6
Samples: 4
Max nTPM: 889.8
Min nTPM: 339.0
RHH5312_R3679
889.8
RHH5220_R3592
339.0
RHH5249_R3621
644.8
RHH5278_R3650
756.6
Switched memory B-cell nTPM: 362.9
Samples: 4
Max nTPM: 559.6
Min nTPM: 233.0
RHH5311_R3678
374.5
RHH5219_R3591
284.4
RHH5248_R3620
233.0
RHH5277_R3649
559.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.9
Schmiedel sample id
TPM
Naive B-cell TPM: 110.9
Samples: 91
Max TPM: 139.6
Min TPM: 39.1
B_CELL_NAIVE_1
139.6
B_CELL_NAIVE_2
139.1
B_CELL_NAIVE_3
138.8
B_CELL_NAIVE_4
135.5
B_CELL_NAIVE_5
134.0
B_CELL_NAIVE_6
131.7
B_CELL_NAIVE_7
131.2
B_CELL_NAIVE_8
130.8
B_CELL_NAIVE_9
129.6
B_CELL_NAIVE_10
127.6
B_CELL_NAIVE_11
127.5
B_CELL_NAIVE_12
126.9
B_CELL_NAIVE_13
126.5
B_CELL_NAIVE_14
125.4
B_CELL_NAIVE_15
125.3
B_CELL_NAIVE_16
125.3
B_CELL_NAIVE_17
125.1
B_CELL_NAIVE_18
124.6
B_CELL_NAIVE_19
124.6
B_CELL_NAIVE_20
124.0
B_CELL_NAIVE_21
123.0
B_CELL_NAIVE_22
122.5
B_CELL_NAIVE_23
122.3
B_CELL_NAIVE_24
122.2
B_CELL_NAIVE_25
120.9
B_CELL_NAIVE_26
119.6
B_CELL_NAIVE_27
119.0
B_CELL_NAIVE_28
118.8
B_CELL_NAIVE_29
118.4
B_CELL_NAIVE_30
117.1
B_CELL_NAIVE_31
117.0
B_CELL_NAIVE_32
116.4
B_CELL_NAIVE_33
115.5
B_CELL_NAIVE_34
114.7
B_CELL_NAIVE_35
113.9
B_CELL_NAIVE_36
113.9
B_CELL_NAIVE_37
113.5
B_CELL_NAIVE_38
113.4
B_CELL_NAIVE_39
112.5
B_CELL_NAIVE_40
112.4
B_CELL_NAIVE_41
112.4
B_CELL_NAIVE_42
111.7
B_CELL_NAIVE_43
111.2
B_CELL_NAIVE_44
111.1
B_CELL_NAIVE_45
110.4
B_CELL_NAIVE_46
110.3
B_CELL_NAIVE_47
110.0
B_CELL_NAIVE_48
109.8
B_CELL_NAIVE_49
109.8
B_CELL_NAIVE_50
109.4
B_CELL_NAIVE_51
109.3
B_CELL_NAIVE_52
108.5
B_CELL_NAIVE_53
108.3
B_CELL_NAIVE_54
107.9
B_CELL_NAIVE_55
107.7
B_CELL_NAIVE_56
107.0
B_CELL_NAIVE_57
106.9
B_CELL_NAIVE_58
106.9
B_CELL_NAIVE_59
106.5
B_CELL_NAIVE_60
106.3
B_CELL_NAIVE_61
105.6
B_CELL_NAIVE_62
105.1
B_CELL_NAIVE_63
105.1
B_CELL_NAIVE_64
104.8
B_CELL_NAIVE_65
104.4
B_CELL_NAIVE_66
103.2
B_CELL_NAIVE_67
103.1
B_CELL_NAIVE_68
102.7
B_CELL_NAIVE_69
102.6
B_CELL_NAIVE_70
102.5
B_CELL_NAIVE_71
102.5
B_CELL_NAIVE_72
102.5
B_CELL_NAIVE_73
102.1
B_CELL_NAIVE_74
102.1
B_CELL_NAIVE_75
101.7
B_CELL_NAIVE_76
100.9
B_CELL_NAIVE_77
100.7
B_CELL_NAIVE_78
100.6
B_CELL_NAIVE_79
100.0
B_CELL_NAIVE_80
99.3
B_CELL_NAIVE_81
93.9
B_CELL_NAIVE_82
92.3
B_CELL_NAIVE_83
91.3
B_CELL_NAIVE_84
91.2
B_CELL_NAIVE_85
90.1
B_CELL_NAIVE_86
89.0
B_CELL_NAIVE_87
87.3
B_CELL_NAIVE_88
85.5
B_CELL_NAIVE_89
82.4
B_CELL_NAIVE_90
77.6
B_CELL_NAIVE_91
39.1
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