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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:349.4 nTPM
HPA Brain:233.6 nTPM
GTEx:349.4 nTPM
FANTOM5:364.8 Scaled Tags Per Million
Pig:105.8 nTPM
Mouse:723.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.6
Sample id Sample description nTPM
Amygdala
nTPM: 223.1
2814 Male, age 76, right hemisphere 290.4
2695 Female, age 67, right hemisphere 219.7
2514 Male, age 75, right hemisphere 217.9
1987 Female, age 91, left hemisphere 201.4
2517 Female, age 94, left hemisphere 185.9
Basal amygdala
nTPM: 223.1
2609 Male, age 75, right hemisphere 264.7
2243 Female, age 91, right hemisphere 251.6
2685 Female, age 94, left hemisphere 225.7
1955 Male, age 76, both hemispheres 219.7
2110 Male, age 80, left hemisphere 196.8
2827 Female, age 67, right hemisphere 180.3
Central amygdala
nTPM: 233.6
1905 Male, age 76, both hemispheres 255.7
2826 Female, age 94, left hemisphere 236.5
2701 Female, age 91, right hemisphere 227.2
2515 Male, age 75, right hemisphere 225.9
2239 Male, age 80, left hemisphere 222.6
Corticomedial amygdala
nTPM: 207.5
2829 Male, age 80, left hemisphere 239.9
2242 Female, age 91, right hemisphere 237.1
2428 Male, age 75, right hemisphere 206.1
2429 Female, age 94, left hemisphere 190.1
2240 Male, age 76, both hemispheres 188.5
2535 Female, age 67, right hemisphere 183.5
Lateral amygdala
nTPM: 205.6
1883 Male, age 76, both hemispheres 244.9
2534 Female, age 94, left hemisphere 232.0
2516 Male, age 75, right hemisphere 207.2
2255 Female, age 91, right hemisphere 202.4
2256 Male, age 80, left hemisphere 187.1
2830 Female, age 67, right hemisphere 160.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 349.4
Samples: 181

Max nTPM: 793.9
Min nTPM: 163.8
Std nTPM: 94.4
Median nTPM: 337.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 793.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 711.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 696.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 591.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 573.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 555.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 531.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 525.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 513.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 499.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 496.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 494.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 479.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 472.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 468.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 467.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 462.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 459.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 451.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 450.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 447.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 444.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 442.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 442.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 440.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 437.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 437.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 436.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 433.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 432.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 428.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 423.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 420.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 412.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 412.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 412.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 412.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 410.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 409.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 408.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 406.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 403.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 402.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 399.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 399.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 399.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 388.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 387.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 386.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 386.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 385.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 385.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 382.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 382.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 382.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 378.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 378.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 378.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 377.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 377.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 375.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 374.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 370.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 368.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 368.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 367.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 366.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 365.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 364.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 364.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 364.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 363.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 363.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 363.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 359.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 358.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 357.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 354.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 352.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 351.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 350.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 346.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 343.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 341.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 340.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 340.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 340.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 340.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 338.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 338.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 337.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 336.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 333.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 333.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 332.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 331.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 331.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 329.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 329.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 329.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 329.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 325.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 323.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 323.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 321.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 320.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 319.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 319.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 317.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 316.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 316.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 314.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 313.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 311.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 310.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 310.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 310.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 309.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 308.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 308.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 306.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 306.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 305.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 304.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 303.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 303.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 302.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 302.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 300.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 300.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 297.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 295.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 294.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 291.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 289.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 289.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 288.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 287.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 286.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 286.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 284.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 283.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 282.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 277.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 275.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 275.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 272.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 271.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 271.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 267.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 266.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 265.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 264.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 263.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 263.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 262.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 261.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 260.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 257.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 255.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 250.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 243.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 242.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 242.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 239.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 234.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 234.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 231.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 222.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 219.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 218.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 216.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 214.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 211.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 210.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 209.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 202.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 193.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 183.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 178.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 163.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

364.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 364.8
FF:10151-102I7 76 years, female 364.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.8
Pig sample Sample description nTPM
Amygdala
nTPM: 105.8
Samples: 4

Max nTPM: 149.7
Min nTPM: 76.7
Sample A Female 149.7
Sample B Female 76.7
Sample C Male 94.9
Sample D Male 101.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

723.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 723.6
Samples: 4

Max nTPM: 779.2
Min nTPM: 697.3
Sample A Male 779.2
Sample B Male 701.9
Sample C Female 697.3
Sample D Female 715.9

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