On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
336.1
nTPM
HPA Brain:
305.2
nTPM
GTEx:
336.1
nTPM
FANTOM5:
321.9
Scaled Tags Per Million
Mouse:
654.6
nTPM
Pig:
102.9
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
305.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 213.7
2666
Male, age 74, left hemisphere
251.2
1827
Male, age 72, unknown
235.0
2586
Male, age 75, left hemisphere
227.4
2828
Female, age 72, unknown
227.3
2219
Male, age 76, both hemispheres
221.2
1870
Female, age 42, unknown
212.9
2411
Female, age 72, unknown
210.9
1833
Male, age 53, unknown
190.5
1830
Male, age 51, unknown
180.2
2019
Male, age 18, unknown
180.0
Dorsal raphe nucleus nTPM: 212.7
2750
Male, age 76, both hemispheres
244.2
2047
Male, age 72, unknown
229.7
2298
Female, age 72, unknown
227.5
1828
Male, age 53, unknown
208.6
2016
Female, age 72, unknown
153.4
Inferior colliculus nTPM: 178.2
2849
Male, age 72, unknown
196.4
1890
Male, age 53, unknown
177.4
2097
Female, age 72, unknown
173.6
1848
Female, age 42, unknown
165.6
Median raphe nucleus nTPM: 305.2
2220
Male, age 76, midline
305.2
Periaquaductal grey, anterior nTPM: 225.8
1795
Male, age 51, unknown
246.7
1947
Male, age 18, unknown
239.4
2502
Female, age 75, unknown
191.4
Periaquaductal grey, dorsal nTPM: 185.3
2850
Male, age 76, both hemispheres
204.5
1840
Male, age 53, unknown
183.7
1831
Male, age 72, unknown
183.3
2464
Female, age 72, unknown
169.7
Periaquaductal grey, lateral nTPM: 159.4
2140
Male, age 76, both hemispheres
166.1
2053
Male, age 18, unknown
156.2
2272
Male, age 74, both hemispheres
156.1
Pretectal area nTPM: 224.4
2007
Male, age 72, unknown
276.4
1816
Male, age 51, unknown
273.6
1817
Female, age 42, unknown
272.1
1944
Female, age 72, unknown
268.7
1815
Male, age 53, unknown
247.0
2667
Female, age 75, unknown
237.3
2224
Female, age 72, unknown
214.6
2825
Male, age 18, unknown
202.5
2407
Male, age 75, both hemispheres
176.2
2273
Male, age 74, both hemispheres
156.1
2316
Male, age 76, right hemisphere
143.7
Red nucleus nTPM: 190.2
2785
Male, age 18, unknown
219.0
2588
Male, age 74, left hemisphere
212.6
2725
Female, age 75, unknown
212.3
1821
Female, age 72, unknown
197.2
2584
Male, age 75, left hemisphere
194.9
2769
Male, age 72, unknown
190.0
2823
Male, age 76, right hemisphere
184.2
2503
Female, age 72, unknown
184.0
2227
Male, age 72, unknown
182.1
1954
Female, age 42, unknown
169.1
1865
Male, age 51, unknown
169.0
1904
Male, age 53, unknown
167.9
Substantia nigra nTPM: 250.9
1916
Female, age 42, unknown
351.1
2665
Male, age 74, both hemispheres
295.2
1941
Male, age 53, unknown
284.4
1851
Male, age 51, unknown
275.2
1889
Female, age 72, unknown
255.0
2699
Male, age 18, unknown
248.0
2583
Male, age 75, right hemisphere
222.7
2590
Female, age 75, unknown
211.6
2241
Male, age 72, unknown
192.0
2409
Female, age 72, unknown
173.7
Superior colliculus nTPM: 196.6
1796
Male, age 53, unknown
230.4
2087
Female, age 72, unknown
222.4
2668
Female, age 75, unknown
219.0
2261
Male, age 18, unknown
204.4
2587
Male, age 74, left hemisphere
203.9
2664
Male, age 75, both hemispheres
201.7
1839
Male, age 51, unknown
185.7
1913
Female, age 42, unknown
182.7
1895
Male, age 76, right hemisphere
160.8
1995
Male, age 72, unknown
155.2
Ventral tegmental area nTPM: 245.0
2218
Male, age 76, both hemispheres
307.4
1915
Female, age 42, unknown
273.4
2410
Female, age 72, unknown
242.4
2223
Female, age 72, unknown
226.7
1942
Male, age 51, unknown
219.1
2021
Male, age 53, unknown
201.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
336.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 336.1
Samples: 183
Max nTPM: 631.5
Min nTPM: 157.7
Std nTPM: 89.6
Median nTPM: 322.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
631.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
622.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
591.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
583.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
564.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
555.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
550.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
524.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
522.1
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
521.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
487.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
482.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
469.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
462.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
458.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
458.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
455.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
449.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
447.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
444.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
442.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
439.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
435.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
434.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
433.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
430.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
430.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
424.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
424.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
423.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
422.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
416.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
413.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
412.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
411.6
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
411.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
408.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
407.1
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
406.1
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
399.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
398.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
397.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
396.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
395.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
393.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
390.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
390.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
388.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
387.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
377.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
374.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
374.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
369.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
368.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
367.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
366.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
365.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
362.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
360.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
359.0
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
358.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
357.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
356.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
355.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
354.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
354.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
351.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
350.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
350.2
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
348.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
345.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
344.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
343.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
343.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
342.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
340.8
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
340.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
339.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
337.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
336.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
335.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
335.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
333.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
332.9
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
332.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
329.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
329.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
325.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
324.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
324.6
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
324.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
322.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
322.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
320.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
320.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
319.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
318.8
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
317.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
316.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
316.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
316.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
314.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
313.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
312.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
310.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
308.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
308.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
308.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
307.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
307.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
304.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
303.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
303.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
303.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
301.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
299.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
298.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
296.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
295.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
294.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
292.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
292.0
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
290.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
289.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
289.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
286.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
285.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
285.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
284.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
283.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
283.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
282.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
281.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
280.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
278.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
277.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
277.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
271.8
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
271.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
270.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
269.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
266.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
265.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
263.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
261.5
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
260.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
257.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
256.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
255.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
254.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
253.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
252.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
251.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
249.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
247.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
246.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
244.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
244.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
243.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
242.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
237.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
236.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
235.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
235.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
233.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
228.8
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
228.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
226.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
223.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
221.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
219.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
216.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
216.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
216.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
216.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
214.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
213.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
198.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
195.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
192.6
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
176.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
164.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
157.7
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
102.9
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 102.9
Samples: 3
Max nTPM: 117.6
Min nTPM: 83.6
Sample A
Female
117.6
Sample B
Female
83.6
Sample C
Male
107.4
Midbrain nTPM: 99.8
Samples: 3
Max nTPM: 114.9
Min nTPM: 87.1
Sample B
Female
87.1
Sample C
Male
114.9
Sample D
Male
97.5
Periaqueductal gray nTPM: 80.6
Samples: 3
Max nTPM: 89.4
Min nTPM: 75.1
Sample B
Female
75.1
Sample C
Male
89.4
Sample D
Male
77.3
Superior colliculi nTPM: 97.5
Samples: 4
Max nTPM: 116.4
Min nTPM: 89.5
Sample A
Female
116.4
Sample B
Female
93.5
Sample C
Male
90.7
Sample D
Male
89.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
654.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 654.6
Samples: 4
Max nTPM: 709.6
Min nTPM: 623.2
Sample A
634.9
Sample B
709.6
Sample C
650.6
Sample D
623.2
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
