A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.4
nTPM
Monaco:
112.2
nTPM
Schmiedel:
136.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.4
HPA sample
nTPM
Memory B-cell nTPM: 34.8
Samples: 6
Max nTPM: 43.2
Min nTPM: 29.1
P10809_1017
34.6
P10809_1025
43.2
P10809_1044
29.1
P10809_1063
31.2
P10809_1092
33.9
P10809_1105
36.5
Naive B-cell nTPM: 39.4
Samples: 6
Max nTPM: 88.9
Min nTPM: 27.1
P10809_1011
31.6
P10809_1029
27.1
P10809_1048
88.9
P10809_1067
29.9
P10809_1091
29.1
P10809_1104
30.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 112.3
Samples: 4
Max nTPM: 140.2
Min nTPM: 94.8
RHH5310_R3677
95.1
RHH5218_R3590
94.8
RHH5247_R3619
140.2
RHH5276_R3648
118.9
Naive B-cell nTPM: 94.9
Samples: 4
Max nTPM: 125.5
Min nTPM: 78.4
RHH5308_R3675
79.8
RHH5216_R3588
125.5
RHH5245_R3617
96.1
RHH5274_R3646
78.4
Non-switched memory B-cell nTPM: 104.1
Samples: 4
Max nTPM: 143.7
Min nTPM: 74.0
RHH5309_R3676
109.6
RHH5217_R3589
143.7
RHH5246_R3618
74.0
RHH5275_R3647
89.1
Plasmablast nTPM: 82.6
Samples: 4
Max nTPM: 106.3
Min nTPM: 62.7
RHH5312_R3679
106.3
RHH5220_R3592
89.3
RHH5249_R3621
72.0
RHH5278_R3650
62.7
Switched memory B-cell nTPM: 99.2
Samples: 4
Max nTPM: 109.8
Min nTPM: 83.4
RHH5311_R3678
94.4
RHH5219_R3591
109.8
RHH5248_R3620
109.2
RHH5277_R3649
83.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
136.2
Schmiedel sample id
TPM
Naive B-cell TPM: 136.2
Samples: 91
Max TPM: 284.6
Min TPM: 71.1
B_CELL_NAIVE_1
284.6
B_CELL_NAIVE_2
241.2
B_CELL_NAIVE_3
226.4
B_CELL_NAIVE_4
216.1
B_CELL_NAIVE_5
213.3
B_CELL_NAIVE_6
211.3
B_CELL_NAIVE_7
205.0
B_CELL_NAIVE_8
200.0
B_CELL_NAIVE_9
199.5
B_CELL_NAIVE_10
198.5
B_CELL_NAIVE_11
197.1
B_CELL_NAIVE_12
185.7
B_CELL_NAIVE_13
181.2
B_CELL_NAIVE_14
178.8
B_CELL_NAIVE_15
173.5
B_CELL_NAIVE_16
170.8
B_CELL_NAIVE_17
168.6
B_CELL_NAIVE_18
167.6
B_CELL_NAIVE_19
165.3
B_CELL_NAIVE_20
164.4
B_CELL_NAIVE_21
162.0
B_CELL_NAIVE_22
156.4
B_CELL_NAIVE_23
154.7
B_CELL_NAIVE_24
148.9
B_CELL_NAIVE_25
148.8
B_CELL_NAIVE_26
148.6
B_CELL_NAIVE_27
148.1
B_CELL_NAIVE_28
146.4
B_CELL_NAIVE_29
145.4
B_CELL_NAIVE_30
142.4
B_CELL_NAIVE_31
142.2
B_CELL_NAIVE_32
141.2
B_CELL_NAIVE_33
140.6
B_CELL_NAIVE_34
140.2
B_CELL_NAIVE_35
140.2
B_CELL_NAIVE_36
134.8
B_CELL_NAIVE_37
134.5
B_CELL_NAIVE_38
133.2
B_CELL_NAIVE_39
132.9
B_CELL_NAIVE_40
132.6
B_CELL_NAIVE_41
132.0
B_CELL_NAIVE_42
131.7
B_CELL_NAIVE_43
131.1
B_CELL_NAIVE_44
130.9
B_CELL_NAIVE_45
130.7
B_CELL_NAIVE_46
130.5
B_CELL_NAIVE_47
129.0
B_CELL_NAIVE_48
128.7
B_CELL_NAIVE_49
128.3
B_CELL_NAIVE_50
127.8
B_CELL_NAIVE_51
126.2
B_CELL_NAIVE_52
124.2
B_CELL_NAIVE_53
123.1
B_CELL_NAIVE_54
121.0
B_CELL_NAIVE_55
120.7
B_CELL_NAIVE_56
118.3
B_CELL_NAIVE_57
117.9
B_CELL_NAIVE_58
117.0
B_CELL_NAIVE_59
116.9
B_CELL_NAIVE_60
116.5
B_CELL_NAIVE_61
112.9
B_CELL_NAIVE_62
112.8
B_CELL_NAIVE_63
112.6
B_CELL_NAIVE_64
111.9
B_CELL_NAIVE_65
111.8
B_CELL_NAIVE_66
109.5
B_CELL_NAIVE_67
109.4
B_CELL_NAIVE_68
106.4
B_CELL_NAIVE_69
105.9
B_CELL_NAIVE_70
105.8
B_CELL_NAIVE_71
105.2
B_CELL_NAIVE_72
105.0
B_CELL_NAIVE_73
103.9
B_CELL_NAIVE_74
102.8
B_CELL_NAIVE_75
101.6
B_CELL_NAIVE_76
98.7
B_CELL_NAIVE_77
98.5
B_CELL_NAIVE_78
98.2
B_CELL_NAIVE_79
98.0
B_CELL_NAIVE_80
97.2
B_CELL_NAIVE_81
97.0
B_CELL_NAIVE_82
91.7
B_CELL_NAIVE_83
91.7
B_CELL_NAIVE_84
91.6
B_CELL_NAIVE_85
91.3
B_CELL_NAIVE_86
90.9
B_CELL_NAIVE_87
87.5
B_CELL_NAIVE_88
85.5
B_CELL_NAIVE_89
79.7
B_CELL_NAIVE_90
78.1
B_CELL_NAIVE_91
71.1
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The Human Protein Atlas project is funded
