A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
64.7
nTPM
Monaco:
143.5
nTPM
Schmiedel:
95.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.7
HPA sample
nTPM
Classical monocyte nTPM: 64.7
Samples: 6
Max nTPM: 93.5
Min nTPM: 50.4
P10809_1003
67.2
P10809_1020
71.9
P10809_1039
93.5
P10809_1058
52.5
P10809_1080
50.4
P10809_1107
52.8
Intermediate monocyte nTPM: 49.1
Samples: 6
Max nTPM: 58.2
Min nTPM: 36.1
P10809_1004
36.1
P10809_1023
58.2
P10809_1042
55.9
P10809_1061
52.3
P10809_1081
46.4
P10809_1108
45.6
Non-classical monocyte nTPM: 42.3
Samples: 5
Max nTPM: 54.6
Min nTPM: 25.0
P10809_1005
50.3
P10809_1053
54.6
P10809_1072
48.9
P10809_1082
25.0
P10809_1109
32.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
143.5
Monaco sample
nTPM
Classical monocyte nTPM: 143.5
Samples: 4
Max nTPM: 166.5
Min nTPM: 122.3
RHH5313_R3680
159.4
RHH5221_R3593
166.5
RHH5250_R3622
125.7
RHH5279_R3651
122.3
Intermediate monocyte nTPM: 118.8
Samples: 4
Max nTPM: 139.7
Min nTPM: 82.3
RHH5314_R3681
125.8
RHH5222_R3594
139.7
RHH5251_R3623
82.3
RHH5280_R3652
127.4
Non-classical monocyte nTPM: 115.9
Samples: 4
Max nTPM: 170.0
Min nTPM: 91.5
RHH5315_R3682
99.2
RHH5223_R3595
170.0
RHH5252_R3624
91.5
RHH5281_R3653
102.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.5
Schmiedel sample id
TPM
Classical monocyte TPM: 91.5
Samples: 91
Max TPM: 139.4
Min TPM: 56.0
MONOCYTES_1
139.4
MONOCYTES_2
136.0
MONOCYTES_3
132.5
MONOCYTES_4
132.4
MONOCYTES_5
131.4
MONOCYTES_6
122.0
MONOCYTES_7
121.7
MONOCYTES_8
120.4
MONOCYTES_9
118.3
MONOCYTES_10
117.2
MONOCYTES_11
113.6
MONOCYTES_12
113.1
MONOCYTES_13
112.8
MONOCYTES_14
112.2
MONOCYTES_15
111.7
MONOCYTES_16
111.6
MONOCYTES_17
111.1
MONOCYTES_18
110.4
MONOCYTES_19
108.1
MONOCYTES_20
108.1
MONOCYTES_21
107.2
MONOCYTES_22
106.3
MONOCYTES_23
105.4
MONOCYTES_24
104.0
MONOCYTES_25
103.9
MONOCYTES_26
101.4
MONOCYTES_27
101.3
MONOCYTES_28
100.1
MONOCYTES_29
97.9
MONOCYTES_30
97.8
MONOCYTES_31
97.3
MONOCYTES_32
97.1
MONOCYTES_33
97.1
MONOCYTES_34
97.0
MONOCYTES_35
96.3
MONOCYTES_36
95.2
MONOCYTES_37
94.3
MONOCYTES_38
93.3
MONOCYTES_39
93.0
MONOCYTES_40
92.5
MONOCYTES_41
91.4
MONOCYTES_42
90.8
MONOCYTES_43
89.3
MONOCYTES_44
89.0
MONOCYTES_45
88.6
MONOCYTES_46
88.6
MONOCYTES_47
87.4
MONOCYTES_48
87.3
MONOCYTES_49
87.1
MONOCYTES_50
86.8
MONOCYTES_51
86.2
MONOCYTES_52
86.1
MONOCYTES_53
85.2
MONOCYTES_54
85.0
MONOCYTES_55
84.5
MONOCYTES_56
83.8
MONOCYTES_57
83.4
MONOCYTES_58
82.7
MONOCYTES_59
82.2
MONOCYTES_60
80.8
MONOCYTES_61
80.6
MONOCYTES_62
80.5
MONOCYTES_63
80.4
MONOCYTES_64
79.5
MONOCYTES_65
77.7
MONOCYTES_66
77.2
MONOCYTES_67
77.0
MONOCYTES_68
76.9
MONOCYTES_69
76.3
MONOCYTES_70
75.3
MONOCYTES_71
75.1
MONOCYTES_72
74.9
MONOCYTES_73
74.6
MONOCYTES_74
74.3
MONOCYTES_75
73.4
MONOCYTES_76
73.1
MONOCYTES_77
72.8
MONOCYTES_78
72.0
MONOCYTES_79
71.4
MONOCYTES_80
70.4
MONOCYTES_81
70.2
MONOCYTES_82
70.1
MONOCYTES_83
69.2
MONOCYTES_84
68.0
MONOCYTES_85
67.4
MONOCYTES_86
67.4
MONOCYTES_87
66.7
MONOCYTES_88
66.5
MONOCYTES_89
64.8
MONOCYTES_90
58.0
MONOCYTES_91
56.0
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Non-classical monocyte TPM: 95.5
Samples: 90
Max TPM: 164.9
Min TPM: 32.9
M2_1
164.9
M2_2
160.4
M2_3
153.7
M2_4
153.2
M2_5
142.6
M2_6
136.6
M2_7
134.9
M2_8
133.6
M2_9
129.6
M2_10
127.5
M2_11
126.2
M2_12
125.4
M2_13
124.9
M2_14
122.2
M2_15
119.7
M2_16
117.7
M2_17
114.5
M2_18
114.3
M2_19
111.0
M2_20
110.8
M2_21
110.3
M2_22
110.1
M2_23
109.8
M2_24
108.7
M2_25
108.3
M2_26
108.0
M2_27
106.6
M2_28
106.1
M2_29
105.9
M2_30
105.3
M2_31
104.8
M2_32
104.3
M2_33
103.3
M2_34
102.9
M2_35
102.4
M2_36
101.6
M2_37
100.2
M2_38
100.1
M2_39
99.4
M2_40
97.5
M2_41
97.5
M2_42
94.6
M2_43
93.9
M2_44
93.1
M2_45
91.6
M2_46
91.4
M2_47
91.3
M2_48
90.5
M2_49
90.3
M2_50
89.0
M2_51
88.3
M2_52
87.8
M2_53
86.8
M2_54
86.7
M2_55
85.3
M2_56
84.5
M2_57
83.8
M2_58
83.7
M2_59
83.4
M2_60
82.7
M2_61
81.9
M2_62
81.7
M2_63
81.6
M2_64
80.9
M2_65
80.3
M2_66
80.1
M2_67
78.3
M2_68
78.1
M2_69
77.9
M2_70
76.1
M2_71
75.8
M2_72
74.2
M2_73
74.1
M2_74
72.0
M2_75
71.8
M2_76
71.3
M2_77
69.0
M2_78
68.8
M2_79
68.5
M2_80
66.2
M2_81
64.8
M2_82
64.2
M2_83
63.6
M2_84
61.7
M2_85
61.7
M2_86
61.0
M2_87
60.8
M2_88
59.5
M2_89
57.7
M2_90
32.9
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The Human Protein Atlas project is funded
