A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
43.0
nTPM
Monaco:
91.3
nTPM
Schmiedel:
51.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.0
HPA sample
nTPM
NK-cell nTPM: 43.0
Samples: 6
Max nTPM: 81.1
Min nTPM: 30.9
P10809_1013
34.5
P10809_1033
40.6
P10809_1052
40.1
P10809_1071
30.9
P10809_1093
81.1
P10809_1103
31.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.3
Monaco sample
nTPM
NK-cell nTPM: 91.3
Samples: 4
Max nTPM: 108.2
Min nTPM: 77.8
RHH5316_R3683
77.8
RHH5224_R3596
108.2
RHH5253_R3625
84.7
RHH5282_R3654
94.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.3
Schmiedel sample id
TPM
NK-cell TPM: 51.3
Samples: 90
Max TPM: 157.2
Min TPM: 25.3
NK_1
157.2
NK_2
120.0
NK_3
106.2
NK_4
100.5
NK_5
87.5
NK_6
86.3
NK_7
82.8
NK_8
80.8
NK_9
77.9
NK_10
73.3
NK_11
72.3
NK_12
70.8
NK_13
70.6
NK_14
70.3
NK_15
68.7
NK_16
67.9
NK_17
67.6
NK_18
67.3
NK_19
62.7
NK_20
61.1
NK_21
60.7
NK_22
59.8
NK_23
59.0
NK_24
56.6
NK_25
55.2
NK_26
54.5
NK_27
54.0
NK_28
53.3
NK_29
52.3
NK_30
51.9
NK_31
51.0
NK_32
50.8
NK_33
50.4
NK_34
50.3
NK_35
50.0
NK_36
49.4
NK_37
48.8
NK_38
48.7
NK_39
48.3
NK_40
48.2
NK_41
48.1
NK_42
48.0
NK_43
47.4
NK_44
47.3
NK_45
46.7
NK_46
46.6
NK_47
46.2
NK_48
46.1
NK_49
45.1
NK_50
45.0
NK_51
44.9
NK_52
44.9
NK_53
44.6
NK_54
44.0
NK_55
43.2
NK_56
43.1
NK_57
42.0
NK_58
42.0
NK_59
41.6
NK_60
41.0
NK_61
40.8
NK_62
40.8
NK_63
40.6
NK_64
40.6
NK_65
40.3
NK_66
39.3
NK_67
38.7
NK_68
37.5
NK_69
37.3
NK_70
37.2
NK_71
36.5
NK_72
35.8
NK_73
35.6
NK_74
34.1
NK_75
32.9
NK_76
32.8
NK_77
32.2
NK_78
31.8
NK_79
31.4
NK_80
31.4
NK_81
31.2
NK_82
31.0
NK_83
30.1
NK_84
29.6
NK_85
29.1
NK_86
28.3
NK_87
28.2
NK_88
28.1
NK_89
26.4
NK_90
25.3
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