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TMEM258
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:136.0 nTPM
HPA Brain:57.3 nTPM
GTEx:136.0 nTPM
FANTOM5:92.0 Scaled Tags Per Million
Pig:50.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 47.8
1981 Female, age 72, midline 74.7
2565 Male, age 75, midline 45.6
2194 Female, age 79, both hemispheres 42.4
2816 Male, age 47, midline 38.3
2048 Male, age 55, midline 38.0
Cervical spinal cord, dorsal horn
nTPM: 57.3
2173 Female, age 72, unknown 87.6
2069 Male, age 47, both hemispheres 70.4
2296 Male, age 66, both hemispheres 68.2
1877 Male, age 55, unknown 51.4
2297 Male, age 75, both hemispheres 35.1
2721 Male, age 90, both hemispheres 31.2
Cervical spinal cord, ventral horn
nTPM: 55.3
2098 Female, age 72, unknown 73.5
2480 Male, age 75, both hemispheres 68.6
2809 Male, age 90, both hemispheres 64.3
2068 Male, age 55, unknown 53.1
2295 Male, age 66, both hemispheres 38.0
2820 Female, age 79, both hemispheres 34.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 136.0
Samples: 159

Max nTPM: 245.2
Min nTPM: 58.2
Std nTPM: 31.9
Median nTPM: 133.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 245.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 218.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 205.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 205.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 199.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 198.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 195.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 193.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 188.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 185.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 182.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 181.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 181.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 180.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 179.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 176.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 176.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 174.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 173.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 173.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 171.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 171.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 170.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 170.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 168.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 168.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 167.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 165.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 164.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 164.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 163.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 162.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 161.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 161.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 161.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 161.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 160.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 160.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 159.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 156.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 156.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 155.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 155.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 154.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 154.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 154.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 154.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 154.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 153.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 152.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 151.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 151.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 149.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 147.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 147.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 146.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 145.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 145.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 145.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 145.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 145.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 144.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 141.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 141.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 141.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 140.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 140.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 139.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 138.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 138.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 137.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 137.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 137.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 137.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 135.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 135.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 134.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 134.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 134.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 133.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 133.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 133.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 132.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 132.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 131.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 130.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 130.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 129.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 128.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 128.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 127.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 127.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 127.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 126.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 126.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 125.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 124.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 124.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 123.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 123.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 123.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 123.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 122.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 121.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 121.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 120.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 119.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 119.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 119.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 119.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 119.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 118.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 118.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 118.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 116.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 116.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 115.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 115.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 115.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 114.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 113.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 113.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 113.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 113.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 112.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 110.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 109.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 109.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 109.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 108.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 108.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 106.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 104.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 103.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 102.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 101.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 101.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 101.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 100.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 99.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 99.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 99.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 99.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 99.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 95.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 95.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 94.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 89.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 86.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 85.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 83.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 83.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 82.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 81.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 79.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 79.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 76.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 69.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 58.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 92.0
FF:10181-103D1 60 years, female 118.7
FF:10159-103A6 76 years, female 65.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.6
Samples: 4

Max nTPM: 68.9
Min nTPM: 38.8
Sample A Female 41.3
Sample B Female 53.4
Sample C Male 68.9
Sample D Male 38.8
Ventral spinal cord
nTPM: 49.3
Samples: 4

Max nTPM: 56.4
Min nTPM: 44.4
Sample A Female 44.4
Sample B Female 56.4
Sample C Male 48.1
Sample D Male 48.4

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