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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:117.6 nTPM
HPA Brain:45.4 nTPM
GTEx:117.6 nTPM
FANTOM5:58.7 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:78.9 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.4
Sample id Sample description nTPM
Amygdala
nTPM: 45.4
2814 Male, age 76, right hemisphere 52.6
2514 Male, age 75, right hemisphere 49.8
2695 Female, age 67, right hemisphere 49.3
2517 Female, age 94, left hemisphere 38.2
1987 Female, age 91, left hemisphere 37.2
Basal amygdala
nTPM: 30.6
2685 Female, age 94, left hemisphere 35.0
2609 Male, age 75, right hemisphere 34.0
1955 Male, age 76, both hemispheres 31.9
2110 Male, age 80, left hemisphere 30.1
2827 Female, age 67, right hemisphere 28.7
2243 Female, age 91, right hemisphere 23.6
Central amygdala
nTPM: 39.5
2826 Female, age 94, left hemisphere 53.4
1905 Male, age 76, both hemispheres 41.5
2515 Male, age 75, right hemisphere 39.9
2239 Male, age 80, left hemisphere 32.1
2701 Female, age 91, right hemisphere 30.7
Corticomedial amygdala
nTPM: 30.4
2428 Male, age 75, right hemisphere 38.0
2829 Male, age 80, left hemisphere 32.5
2429 Female, age 94, left hemisphere 31.2
2242 Female, age 91, right hemisphere 28.8
2240 Male, age 76, both hemispheres 27.9
2535 Female, age 67, right hemisphere 24.1
Lateral amygdala
nTPM: 36.9
2516 Male, age 75, right hemisphere 43.7
1883 Male, age 76, both hemispheres 40.6
2534 Female, age 94, left hemisphere 40.6
2830 Female, age 67, right hemisphere 37.4
2256 Male, age 80, left hemisphere 33.0
2255 Female, age 91, right hemisphere 26.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 117.6
Samples: 152

Max nTPM: 285.8
Min nTPM: 65.7
Std nTPM: 36.1
Median nTPM: 110.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 285.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 261.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 260.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 244.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 225.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 221.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 184.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 182.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 181.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 174.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 168.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 156.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 155.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 153.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 153.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 151.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 149.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 149.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 148.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 148.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 144.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 143.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 143.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 142.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 141.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 141.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 140.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 140.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 137.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 137.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 135.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 135.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 134.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 133.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 133.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 133.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 130.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 129.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 127.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 127.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 127.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 127.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 126.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 125.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 125.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 124.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 123.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 123.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 122.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 122.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 122.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 122.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 122.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 120.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 119.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 119.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 118.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 117.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 116.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 115.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 114.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 114.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 114.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 114.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 114.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 113.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 112.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 112.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 112.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 111.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 111.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 111.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 110.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 110.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 110.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 110.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 109.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 109.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 108.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 108.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 108.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 107.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 106.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 106.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 106.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 106.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 105.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 105.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 104.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 104.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 103.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 103.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 103.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 102.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 102.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 101.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 101.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 101.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 100.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 99.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 99.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 99.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 99.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 98.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 98.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 97.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 96.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 95.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 95.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 94.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 94.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 94.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 93.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 93.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 92.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 92.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 92.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 91.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 90.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 90.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 90.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 89.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 89.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 88.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 87.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 87.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 87.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 86.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 85.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 84.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 83.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 82.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 81.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 81.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 80.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 79.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 78.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 77.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 76.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 75.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 74.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 72.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 66.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 65.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 65.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 58.7
FF:10151-102I7 76 years, female 58.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.2
Pig sample Sample description nTPM
Amygdala
nTPM: 18.2
Samples: 4

Max nTPM: 21.5
Min nTPM: 13.6
Sample A Female 21.1
Sample B Female 21.5
Sample C Male 16.5
Sample D Male 13.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 78.9
Samples: 4

Max nTPM: 84.0
Min nTPM: 74.9
Sample A Male 74.9
Sample B Male 76.4
Sample C Female 80.4
Sample D Female 84.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
74635126 Antisense, RP_060215_03_D06, Mouse strain C57BL/6J (56 days, male) 0.1

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