We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
DNAJB2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • DNAJB2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:180.3 nTPM
HPA Brain:168.5 nTPM
GTEx:180.3 nTPM
FANTOM5:313.4 Scaled Tags Per Million
Pig:78.8 nTPM
Mouse:62.4 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.5
Sample id Sample description nTPM
Amygdala
nTPM: 166.6
2814 Male, age 76, right hemisphere 207.0
2695 Female, age 67, right hemisphere 171.9
2517 Female, age 94, left hemisphere 167.2
2514 Male, age 75, right hemisphere 148.8
1987 Female, age 91, left hemisphere 138.0
Basal amygdala
nTPM: 149.5
2685 Female, age 94, left hemisphere 166.8
2827 Female, age 67, right hemisphere 162.6
2110 Male, age 80, left hemisphere 147.7
2609 Male, age 75, right hemisphere 145.9
1955 Male, age 76, both hemispheres 145.5
2243 Female, age 91, right hemisphere 128.3
Central amygdala
nTPM: 167.1
1905 Male, age 76, both hemispheres 191.2
2826 Female, age 94, left hemisphere 189.9
2515 Male, age 75, right hemisphere 158.3
2239 Male, age 80, left hemisphere 149.4
2701 Female, age 91, right hemisphere 146.9
Corticomedial amygdala
nTPM: 129.8
2535 Female, age 67, right hemisphere 146.2
2829 Male, age 80, left hemisphere 144.9
2428 Male, age 75, right hemisphere 139.5
2240 Male, age 76, both hemispheres 128.7
2429 Female, age 94, left hemisphere 119.5
2242 Female, age 91, right hemisphere 99.9
Lateral amygdala
nTPM: 168.5
2830 Female, age 67, right hemisphere 186.6
2534 Female, age 94, left hemisphere 181.1
1883 Male, age 76, both hemispheres 179.4
2256 Male, age 80, left hemisphere 163.7
2516 Male, age 75, right hemisphere 157.2
2255 Female, age 91, right hemisphere 143.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 180.3
Samples: 181

Max nTPM: 343.5
Min nTPM: 96.3
Std nTPM: 36.3
Median nTPM: 175.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 343.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 322.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 300.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 282.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 270.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 259.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 250.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 243.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 242.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 238.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 237.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 236.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 234.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 232.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 230.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 229.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 229.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 226.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 226.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 224.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 221.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 217.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 217.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 217.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 217.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 216.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 214.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 214.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 214.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 211.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 211.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 208.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 207.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 206.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 206.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 206.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 205.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 205.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 205.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 204.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 204.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 204.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 204.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 203.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 201.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 200.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 199.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 199.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 197.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 194.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 192.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 192.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 192.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 192.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 192.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 191.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 191.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 191.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 190.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 190.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 189.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 189.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 189.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 187.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 187.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 186.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 186.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 186.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 186.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 185.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 185.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 184.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 184.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 184.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 184.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 184.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 182.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 181.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 180.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 180.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 179.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 179.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 178.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 178.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 177.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 177.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 177.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 176.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 176.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 176.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 175.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 175.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 175.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 174.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 174.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 174.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 172.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 170.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 169.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 169.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 168.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 168.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 168.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 168.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 167.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 167.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 166.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 165.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 165.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 165.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 164.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 163.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 162.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 162.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 161.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 161.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 160.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 160.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 160.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 159.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 159.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 159.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 159.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 159.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 158.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 158.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 158.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 157.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 157.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 157.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 157.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 156.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 156.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 156.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 154.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 154.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 154.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 154.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 154.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 153.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 153.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 152.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 152.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 151.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 150.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 149.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 149.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 149.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 148.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 148.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 147.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 147.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 147.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 146.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 146.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 146.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 146.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 145.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 144.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 143.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 142.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 142.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 140.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 140.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 139.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 139.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 139.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 137.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 137.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 136.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 136.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 136.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 135.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 134.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 134.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 134.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 131.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 122.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 121.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 96.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

313.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 313.4
FF:10151-102I7 76 years, female 313.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.8
Pig sample Sample description nTPM
Amygdala
nTPM: 78.8
Samples: 4

Max nTPM: 94.6
Min nTPM: 58.0
Sample A Female 83.0
Sample B Female 94.6
Sample C Male 79.7
Sample D Male 58.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 62.4
Samples: 4

Max nTPM: 70.6
Min nTPM: 56.3
Sample A Male 63.8
Sample B Male 56.3
Sample C Female 70.6
Sample D Female 58.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.9
564753 Antisense, RP_040826_01_C09, Mouse strain C57BL/6J (56 days, male) 0.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo