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  • ITM2B
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:317.3 nTPM
HPA Brain:436.5 nTPM
GTEx:317.3 nTPM
FANTOM5:828.0 Scaled Tags Per Million
Pig:385.1 nTPM
Mouse:499.4 nTPM
Allen mouse:24.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

436.5
Sample id Sample description nTPM
Amygdala
nTPM: 436.5
2814 Male, age 76, right hemisphere 525.9
2514 Male, age 75, right hemisphere 475.8
2695 Female, age 67, right hemisphere 471.0
1987 Female, age 91, left hemisphere 391.7
2517 Female, age 94, left hemisphere 318.2
Basal amygdala
nTPM: 327.0
1955 Male, age 76, both hemispheres 412.8
2609 Male, age 75, right hemisphere 402.0
2243 Female, age 91, right hemisphere 311.3
2110 Male, age 80, left hemisphere 309.3
2685 Female, age 94, left hemisphere 296.6
2827 Female, age 67, right hemisphere 229.8
Central amygdala
nTPM: 374.4
1905 Male, age 76, both hemispheres 446.3
2826 Female, age 94, left hemisphere 407.2
2515 Male, age 75, right hemisphere 366.5
2239 Male, age 80, left hemisphere 340.2
2701 Female, age 91, right hemisphere 311.9
Corticomedial amygdala
nTPM: 325.3
2240 Male, age 76, both hemispheres 376.7
2428 Male, age 75, right hemisphere 372.2
2829 Male, age 80, left hemisphere 344.3
2242 Female, age 91, right hemisphere 317.9
2429 Female, age 94, left hemisphere 292.2
2535 Female, age 67, right hemisphere 248.9
Lateral amygdala
nTPM: 321.1
1883 Male, age 76, both hemispheres 416.6
2516 Male, age 75, right hemisphere 341.6
2534 Female, age 94, left hemisphere 336.2
2255 Female, age 91, right hemisphere 293.6
2256 Male, age 80, left hemisphere 291.1
2830 Female, age 67, right hemisphere 247.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 317.3
Samples: 181

Max nTPM: 673.8
Min nTPM: 166.6
Std nTPM: 81.9
Median nTPM: 307.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 673.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 602.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 576.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 568.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 565.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 502.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 494.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 475.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 456.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 453.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 453.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 443.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 440.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 440.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 435.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 434.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 431.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 426.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 421.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 420.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 419.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 410.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 405.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 401.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 392.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 392.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 386.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 384.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 382.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 380.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 378.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 377.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 375.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 375.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 373.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 369.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 366.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 365.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 363.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 360.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 358.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 357.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 356.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 355.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 354.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 352.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 350.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 349.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 349.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 348.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 345.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 343.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 342.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 340.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 340.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 340.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 339.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 339.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 338.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 338.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 336.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 336.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 335.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 334.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 333.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 333.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 333.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 331.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 331.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 329.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 327.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 327.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 326.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 325.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 322.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 322.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 320.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 320.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 319.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 317.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 316.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 314.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 313.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 312.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 311.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 311.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 311.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 309.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 309.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 307.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 307.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 306.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 305.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 305.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 305.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 302.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 301.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 301.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 300.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 299.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 299.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 299.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 298.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 296.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 293.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 292.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 292.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 292.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 292.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 290.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 287.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 286.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 286.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 284.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 281.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 281.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 279.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 278.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 278.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 276.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 275.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 274.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 273.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 272.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 272.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 270.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 270.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 268.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 268.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 268.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 267.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 266.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 265.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 265.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 263.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 262.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 262.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 261.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 259.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 258.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 253.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 250.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 249.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 248.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 247.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 247.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 247.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 245.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 245.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 244.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 243.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 242.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 242.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 240.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 240.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 240.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 239.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 239.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 239.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 238.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 238.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 236.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 235.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 229.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 229.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 226.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 222.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 221.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 219.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 218.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 212.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 210.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 205.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 202.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 200.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 191.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 183.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 182.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 179.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 171.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 166.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

828.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 828.0
FF:10151-102I7 76 years, female 828.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

385.1
Pig sample Sample description nTPM
Amygdala
nTPM: 385.2
Samples: 4

Max nTPM: 456.7
Min nTPM: 319.4
Sample A Female 428.6
Sample B Female 456.7
Sample C Male 335.9
Sample D Male 319.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

499.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 499.4
Samples: 4

Max nTPM: 544.3
Min nTPM: 468.0
Sample A Male 474.3
Sample B Male 468.0
Sample C Female 544.3
Sample D Female 510.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.2
532581 Antisense, RP_040810_02_C03, Mouse strain C57BL/6J (56 days, male) 24.2

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