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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:161.4 nTPM
GTEx:161.4 nTPM
FANTOM5:1568.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 161.4
Samples: 105

Max nTPM: 407.5
Min nTPM: 51.1
Std nTPM: 97.2
Median nTPM:
142_1 61 years, female 407.5
17_1 71 years, male 390.2
162_1 79 years, female 375.6
137_1 83 years, male 372.4
139_1 64 years, female 370.6
89_1 63 years, male 350.1
4_1 88 years, female 348.1
149_1 88 years, male 347.6
42_1 85 years, male 342.7
120_1 70 years, female 328.7
119_1 70 years, female 322.5
109_1 81 years, female 321.9
2_1 77 years, female 319.2
145_1 84 years, male 315.4
35_1 74 years, female 312.0
126_1 63 years, male 308.4
32_1 67 years, male 307.5
43_1 64 years, female 304.3
153_1 70 years, female 296.3
18_1 88 years, male 281.3
81_1 67 years, male 275.2
117_1 61 years, male 267.5
9_1 66 years, female 255.6
6_1 73 years, female 233.6
115_1 83 years, male 228.0
491_1 89 years, female 227.5
99_1 64 years, male 220.3
315_1 62 years, female 216.6
217_1 76 years, male 193.1
501_1 88 years, male 185.3
518_1 75 years, female 180.5
506_1 65 years, male 179.7
314_1 67 years, male 165.9
322_1 76 years, male 162.6
490_1 67 years, female 160.7
495_1 57 years, female 160.4
503_1 68 years, male 154.6
517_1 88 years, male 149.6
356_1 87 years, female 149.1
320_1 89 years, female 147.2
291_1 76 years, male 138.9
288_1 66 years, female 138.0
293_1 68 years, female 135.8
41_1 94 years, female 134.9
354_1 81 years, female 134.6
351_1 91 years, male 133.6
466_1 57 years, female 126.3
348_1 84 years, male 125.3
316_1 62 years, male 122.5
251_1 78 years, male 120.8
311_1 78 years, male 120.7
353_1 82 years, female 120.7
243_1 75 years, male 119.9
468_1 89 years, male 118.8
415_1 77 years, female 117.8
295_1 61 years, female 117.7
292_1 71 years, male 116.9
313_1 79 years, female 114.7
499_1 55 years, female 114.3
526_1 61 years, male 112.4
324_1 76 years, male 112.3
319_1 81 years, male 111.7
335_1 73 years, female 110.1
307_1 66 years, female 107.1
452_1 88 years, female 106.1
352_1 62 years, male 105.6
254_1 77 years, female 105.0
349_1 83 years, male 104.2
350_1 84 years, female 103.1
266_1 85 years, male 100.7
308_1 70 years, female 99.4
265_1 87 years, male 97.3
480_1 63 years, male 97.0
413_1 59 years, female 94.3
377_1 82 years, female 93.9
447_1 81 years, male 93.6
406_1 79 years, male 93.4
318_1 68 years, male 91.0
386_1 76 years, male 90.4
264_1 73 years, female 90.1
396_1 62 years, male 88.6
384_1 83 years, male 87.0
286_1 68 years, female 84.5
173_1 67 years, male 84.2
375_1 74 years, female 83.5
355_1 70 years, female 82.6
389_1 86 years, female 81.2
317_1 60 years, male 81.1
347_1 72 years, male 79.3
321_1 62 years, female 79.2
414_1 84 years, female 78.9
405_1 91 years, male 75.3
379_1 60 years, male 75.2
237_1 82 years, male 72.5
376_1 75 years, female 71.0
163_1 78 years, male 69.8
394_1 75 years, female 69.7
189_1 76 years, male 65.2
172_1 72 years, female 64.8
218_1 71 years, female 64.8
246_1 77 years, male 60.3
404_1 82 years, female 57.6
177_1 74 years, male 56.1
425_1 59 years, female 54.9
229_1 69 years, female 51.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1568.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1568.9
FF:10030-101E3 24-65 years, mixed 1568.9

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