MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:377.6 nTPM
HPA Brain:489.0 nTPM
GTEx:377.6 nTPM
FANTOM5:1108.7 Scaled Tags Per Million
Pig:888.5 nTPM
Mouse:567.2 nTPM
Allen mouse:20.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 489.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 400.3
1870 Female, age 42, unknown 463.1
2828 Female, age 72, unknown 441.0
2586 Male, age 75, left hemisphere 435.7
2219 Male, age 76, both hemispheres 425.4
1833 Male, age 53, unknown 413.8
2666 Male, age 74, left hemisphere 381.2
1830 Male, age 51, unknown 378.7
1827 Male, age 72, unknown 359.2
2411 Female, age 72, unknown 354.7
2019 Male, age 18, unknown 350.3
Dorsal raphe nucleus
nTPM: 460.7
2298 Female, age 72, unknown 545.9
2016 Female, age 72, unknown 476.9
2047 Male, age 72, unknown 453.4
1828 Male, age 53, unknown 452.6
2750 Male, age 76, both hemispheres 374.4
Inferior colliculus
nTPM: 440.8
2097 Female, age 72, unknown 447.4
2849 Male, age 72, unknown 444.9
1890 Male, age 53, unknown 439.6
1848 Female, age 42, unknown 431.4
Median raphe nucleus
nTPM: 451.4
2220 Male, age 76, midline 451.4
Periaquaductal grey, anterior
nTPM: 404.9
1947 Male, age 18, unknown 428.6
2502 Female, age 75, unknown 413.6
1795 Male, age 51, unknown 372.5
Periaquaductal grey, dorsal
nTPM: 428.5
2850 Male, age 76, both hemispheres 534.6
1840 Male, age 53, unknown 448.5
1831 Male, age 72, unknown 377.3
2464 Female, age 72, unknown 353.7
Periaquaductal grey, lateral
nTPM: 447.1
2053 Male, age 18, unknown 458.0
2272 Male, age 74, both hemispheres 455.8
2140 Male, age 76, both hemispheres 427.6
Pretectal area
nTPM: 436.8
1944 Female, age 72, unknown 506.8
2224 Female, age 72, unknown 477.4
2273 Male, age 74, both hemispheres 471.7
1817 Female, age 42, unknown 469.1
1816 Male, age 51, unknown 468.9
1815 Male, age 53, unknown 458.9
2667 Female, age 75, unknown 439.3
2007 Male, age 72, unknown 423.6
2825 Male, age 18, unknown 399.7
2407 Male, age 75, both hemispheres 349.1
2316 Male, age 76, right hemisphere 340.6
Red nucleus
nTPM: 430.8
2503 Female, age 72, unknown 495.7
2725 Female, age 75, unknown 490.8
1904 Male, age 53, unknown 473.5
1954 Female, age 42, unknown 465.4
1821 Female, age 72, unknown 462.0
1865 Male, age 51, unknown 461.7
2769 Male, age 72, unknown 445.6
2823 Male, age 76, right hemisphere 430.2
2227 Male, age 72, unknown 406.8
2785 Male, age 18, unknown 402.6
2584 Male, age 75, left hemisphere 327.7
2588 Male, age 74, left hemisphere 307.9
Substantia nigra
nTPM: 489.0
1916 Female, age 42, unknown 643.8
2241 Male, age 72, unknown 548.3
2699 Male, age 18, unknown 521.9
1889 Female, age 72, unknown 504.9
1851 Male, age 51, unknown 499.8
2409 Female, age 72, unknown 486.3
2583 Male, age 75, right hemisphere 432.0
1941 Male, age 53, unknown 429.2
2590 Female, age 75, unknown 420.9
2665 Male, age 74, both hemispheres 403.1
Superior colliculus
nTPM: 417.9
1913 Female, age 42, unknown 488.5
2587 Male, age 74, left hemisphere 472.2
1995 Male, age 72, unknown 467.6
2261 Male, age 18, unknown 463.0
2087 Female, age 72, unknown 427.1
1796 Male, age 53, unknown 408.0
2668 Female, age 75, unknown 400.0
1839 Male, age 51, unknown 364.5
1895 Male, age 76, right hemisphere 355.0
2664 Male, age 75, both hemispheres 333.5
Ventral tegmental area
nTPM: 453.0
1915 Female, age 42, unknown 515.4
2218 Male, age 76, both hemispheres 497.3
1942 Male, age 51, unknown 484.5
2410 Female, age 72, unknown 410.8
2223 Female, age 72, unknown 405.2
2021 Male, age 53, unknown 404.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 377.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 377.6
Samples: 183

Max nTPM: 682.3
Min nTPM: 207.2
Std nTPM: 85.2
Median nTPM: 366.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 682.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 657.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 604.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 596.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 574.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 572.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 551.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 540.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 533.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 528.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 513.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1108.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1108.7
FF:10158-103A5 76 years, female 1108.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 888.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 875.1
Samples: 4

Max nTPM: 985.2
Min nTPM: 719.7
Sample A Female 985.2
Sample B Female 865.5
Sample C Male 719.7
Sample D Male 930.1
Midbrain
nTPM: 888.5
Samples: 4

Max nTPM: 1519.7
Min nTPM: 614.3
Sample A Female 1519.7
Sample B Female 769.7
Sample C Male 650.2
Sample D Male 614.3
Periaqueductal gray
nTPM: 740.1
Samples: 3

Max nTPM: 782.1
Min nTPM: 702.4
Sample B Female 735.9
Sample C Male 782.1
Sample D Male 702.4
Superior colliculi
nTPM: 781.5
Samples: 4

Max nTPM: 899.2
Min nTPM: 663.0
Sample A Female 899.2
Sample B Female 849.7
Sample C Male 663.0
Sample D Male 714.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 567.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 567.2
Samples: 4

Max nTPM: 573.5
Min nTPM: 557.0
Sample A Male 573.5
Sample B Male 567.7
Sample C Female 570.5
Sample D Female 557.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.3
532581 Antisense, RP_040810_02_C03, Mouse strain C57BL/6J (56 days, male) 20.3

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