A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
58.4
nTPM
Monaco:
44.0
nTPM
Schmiedel:
54.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.4
HPA sample
nTPM
Memory B-cell nTPM: 56.6
Samples: 6
Max nTPM: 248.1
Min nTPM: 13.4
P10809_1017
20.7
P10809_1025
21.4
P10809_1044
248.1
P10809_1063
13.4
P10809_1092
21.4
P10809_1105
14.8
Naive B-cell nTPM: 58.4
Samples: 6
Max nTPM: 244.7
Min nTPM: 17.0
P10809_1011
29.2
P10809_1029
19.2
P10809_1048
244.7
P10809_1067
17.7
P10809_1091
22.8
P10809_1104
17.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 23.3
Samples: 4
Max nTPM: 74.6
Min nTPM: 1.7
RHH5310_R3677
4.9
RHH5218_R3590
1.7
RHH5247_R3619
11.9
RHH5276_R3648
74.6
Naive B-cell nTPM: 35.8
Samples: 4
Max nTPM: 89.0
Min nTPM: 1.9
RHH5308_R3675
89.0
RHH5216_R3588
1.9
RHH5245_R3617
25.0
RHH5274_R3646
27.2
Non-switched memory B-cell nTPM: 16.2
Samples: 4
Max nTPM: 30.4
Min nTPM: 2.2
RHH5309_R3676
16.2
RHH5217_R3589
2.2
RHH5246_R3618
15.8
RHH5275_R3647
30.4
Plasmablast nTPM: 44.0
Samples: 4
Max nTPM: 77.6
Min nTPM: 2.2
RHH5312_R3679
2.2
RHH5220_R3592
55.5
RHH5249_R3621
77.6
RHH5278_R3650
40.6
Switched memory B-cell nTPM: 24.6
Samples: 4
Max nTPM: 61.7
Min nTPM: 2.6
RHH5311_R3678
4.7
RHH5219_R3591
61.7
RHH5248_R3620
2.6
RHH5277_R3649
29.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.2
Schmiedel sample id
TPM
Naive B-cell TPM: 54.2
Samples: 91
Max TPM: 81.2
Min TPM: 36.7
B_CELL_NAIVE_1
81.2
B_CELL_NAIVE_2
78.1
B_CELL_NAIVE_3
74.9
B_CELL_NAIVE_4
69.0
B_CELL_NAIVE_5
68.8
B_CELL_NAIVE_6
68.5
B_CELL_NAIVE_7
67.3
B_CELL_NAIVE_8
66.9
B_CELL_NAIVE_9
66.5
B_CELL_NAIVE_10
66.0
B_CELL_NAIVE_11
64.8
B_CELL_NAIVE_12
64.0
B_CELL_NAIVE_13
63.7
B_CELL_NAIVE_14
63.5
B_CELL_NAIVE_15
62.8
B_CELL_NAIVE_16
62.2
B_CELL_NAIVE_17
61.9
B_CELL_NAIVE_18
61.3
B_CELL_NAIVE_19
61.2
B_CELL_NAIVE_20
61.2
B_CELL_NAIVE_21
61.0
B_CELL_NAIVE_22
60.8
B_CELL_NAIVE_23
60.7
B_CELL_NAIVE_24
60.0
B_CELL_NAIVE_25
59.5
B_CELL_NAIVE_26
58.6
B_CELL_NAIVE_27
58.3
B_CELL_NAIVE_28
58.3
B_CELL_NAIVE_29
57.0
B_CELL_NAIVE_30
57.0
B_CELL_NAIVE_31
56.8
B_CELL_NAIVE_32
56.8
B_CELL_NAIVE_33
56.4
B_CELL_NAIVE_34
55.5
B_CELL_NAIVE_35
55.2
B_CELL_NAIVE_36
55.0
B_CELL_NAIVE_37
55.0
B_CELL_NAIVE_38
54.7
B_CELL_NAIVE_39
54.3
B_CELL_NAIVE_40
54.2
B_CELL_NAIVE_41
54.1
B_CELL_NAIVE_42
53.8
B_CELL_NAIVE_43
53.6
B_CELL_NAIVE_44
53.5
B_CELL_NAIVE_45
53.5
B_CELL_NAIVE_46
53.5
B_CELL_NAIVE_47
53.1
B_CELL_NAIVE_48
53.0
B_CELL_NAIVE_49
52.2
B_CELL_NAIVE_50
52.2
B_CELL_NAIVE_51
52.1
B_CELL_NAIVE_52
51.5
B_CELL_NAIVE_53
51.2
B_CELL_NAIVE_54
51.1
B_CELL_NAIVE_55
51.0
B_CELL_NAIVE_56
50.7
B_CELL_NAIVE_57
50.3
B_CELL_NAIVE_58
49.7
B_CELL_NAIVE_59
49.5
B_CELL_NAIVE_60
49.4
B_CELL_NAIVE_61
49.1
B_CELL_NAIVE_62
49.1
B_CELL_NAIVE_63
49.0
B_CELL_NAIVE_64
48.8
B_CELL_NAIVE_65
48.7
B_CELL_NAIVE_66
48.7
B_CELL_NAIVE_67
48.2
B_CELL_NAIVE_68
48.0
B_CELL_NAIVE_69
47.7
B_CELL_NAIVE_70
47.4
B_CELL_NAIVE_71
46.9
B_CELL_NAIVE_72
46.8
B_CELL_NAIVE_73
46.5
B_CELL_NAIVE_74
46.2
B_CELL_NAIVE_75
46.0
B_CELL_NAIVE_76
46.0
B_CELL_NAIVE_77
45.9
B_CELL_NAIVE_78
45.3
B_CELL_NAIVE_79
45.1
B_CELL_NAIVE_80
44.3
B_CELL_NAIVE_81
44.3
B_CELL_NAIVE_82
44.2
B_CELL_NAIVE_83
44.0
B_CELL_NAIVE_84
43.9
B_CELL_NAIVE_85
43.8
B_CELL_NAIVE_86
42.6
B_CELL_NAIVE_87
42.6
B_CELL_NAIVE_88
42.2
B_CELL_NAIVE_89
41.2
B_CELL_NAIVE_90
41.1
B_CELL_NAIVE_91
36.7
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The Human Protein Atlas project is funded
