A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.1
nTPM
Monaco:
35.4
nTPM
Schmiedel:
123.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.1
HPA sample
nTPM
NK-cell nTPM: 28.1
Samples: 6
Max nTPM: 38.9
Min nTPM: 13.4
P10809_1013
37.7
P10809_1033
13.4
P10809_1052
22.6
P10809_1071
28.6
P10809_1093
38.9
P10809_1103
27.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.4
Monaco sample
nTPM
NK-cell nTPM: 35.4
Samples: 4
Max nTPM: 63.4
Min nTPM: 7.2
RHH5316_R3683
63.4
RHH5224_R3596
7.2
RHH5253_R3625
46.9
RHH5282_R3654
24.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.4
Schmiedel sample id
TPM
NK-cell TPM: 123.4
Samples: 90
Max TPM: 176.6
Min TPM: 89.3
NK_1
176.6
NK_2
165.6
NK_3
165.5
NK_4
155.0
NK_5
150.2
NK_6
148.8
NK_7
148.5
NK_8
147.0
NK_9
145.4
NK_10
145.1
NK_11
145.0
NK_12
143.3
NK_13
142.7
NK_14
141.2
NK_15
141.0
NK_16
137.9
NK_17
137.6
NK_18
136.6
NK_19
136.1
NK_20
135.7
NK_21
133.7
NK_22
132.8
NK_23
131.5
NK_24
130.6
NK_25
130.1
NK_26
129.7
NK_27
129.5
NK_28
129.2
NK_29
128.9
NK_30
128.3
NK_31
128.1
NK_32
127.4
NK_33
127.0
NK_34
126.0
NK_35
125.1
NK_36
124.4
NK_37
124.2
NK_38
124.1
NK_39
123.8
NK_40
123.1
NK_41
123.0
NK_42
122.9
NK_43
122.4
NK_44
122.3
NK_45
122.3
NK_46
121.6
NK_47
120.9
NK_48
120.9
NK_49
119.5
NK_50
119.4
NK_51
119.3
NK_52
118.2
NK_53
118.1
NK_54
117.9
NK_55
117.8
NK_56
117.6
NK_57
116.8
NK_58
116.5
NK_59
116.4
NK_60
116.4
NK_61
115.9
NK_62
115.7
NK_63
115.6
NK_64
115.5
NK_65
114.6
NK_66
114.2
NK_67
113.7
NK_68
113.4
NK_69
113.3
NK_70
111.8
NK_71
111.1
NK_72
110.2
NK_73
110.0
NK_74
108.7
NK_75
108.2
NK_76
107.7
NK_77
107.4
NK_78
106.8
NK_79
106.6
NK_80
104.2
NK_81
103.3
NK_82
102.0
NK_83
101.8
NK_84
101.7
NK_85
98.5
NK_86
98.2
NK_87
98.2
NK_88
98.1
NK_89
96.6
NK_90
89.3
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