A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
122.7
nTPM
Monaco:
105.3
nTPM
Schmiedel:
196.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.7
HPA sample
nTPM
Classical monocyte nTPM: 122.7
Samples: 6
Max nTPM: 337.8
Min nTPM: 44.7
P10809_1003
94.6
P10809_1020
84.1
P10809_1039
337.8
P10809_1058
50.2
P10809_1080
44.7
P10809_1107
124.8
Intermediate monocyte nTPM: 88.4
Samples: 6
Max nTPM: 232.2
Min nTPM: 37.5
P10809_1004
95.9
P10809_1023
63.2
P10809_1042
62.5
P10809_1061
37.5
P10809_1081
39.0
P10809_1108
232.2
Non-classical monocyte nTPM: 88.9
Samples: 5
Max nTPM: 160.9
Min nTPM: 34.4
P10809_1005
131.9
P10809_1053
34.4
P10809_1072
53.3
P10809_1082
64.1
P10809_1109
160.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.3
Monaco sample
nTPM
Classical monocyte nTPM: 58.1
Samples: 4
Max nTPM: 152.9
Min nTPM: 18.3
RHH5313_R3680
33.7
RHH5221_R3593
152.9
RHH5250_R3622
18.3
RHH5279_R3651
27.5
Intermediate monocyte nTPM: 105.3
Samples: 4
Max nTPM: 168.3
Min nTPM: 20.0
RHH5314_R3681
168.3
RHH5222_R3594
155.5
RHH5251_R3623
77.5
RHH5280_R3652
20.0
Non-classical monocyte nTPM: 79.2
Samples: 4
Max nTPM: 152.8
Min nTPM: 11.3
RHH5315_R3682
152.8
RHH5223_R3595
22.7
RHH5252_R3624
130.1
RHH5281_R3653
11.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
196.8
Schmiedel sample id
TPM
Classical monocyte TPM: 196.8
Samples: 91
Max TPM: 261.4
Min TPM: 149.2
MONOCYTES_1
261.4
MONOCYTES_2
236.7
MONOCYTES_3
234.7
MONOCYTES_4
230.3
MONOCYTES_5
229.3
MONOCYTES_6
228.9
MONOCYTES_7
225.6
MONOCYTES_8
222.5
MONOCYTES_9
220.9
MONOCYTES_10
219.1
MONOCYTES_11
218.6
MONOCYTES_12
218.4
MONOCYTES_13
216.3
MONOCYTES_14
216.0
MONOCYTES_15
214.5
MONOCYTES_16
213.9
MONOCYTES_17
213.1
MONOCYTES_18
209.3
MONOCYTES_19
209.2
MONOCYTES_20
208.7
MONOCYTES_21
208.0
MONOCYTES_22
207.8
MONOCYTES_23
207.7
MONOCYTES_24
207.7
MONOCYTES_25
207.6
MONOCYTES_26
207.3
MONOCYTES_27
207.3
MONOCYTES_28
207.0
MONOCYTES_29
207.0
MONOCYTES_30
205.9
MONOCYTES_31
205.4
MONOCYTES_32
205.4
MONOCYTES_33
204.6
MONOCYTES_34
203.2
MONOCYTES_35
202.3
MONOCYTES_36
201.5
MONOCYTES_37
201.4
MONOCYTES_38
200.8
MONOCYTES_39
200.7
MONOCYTES_40
200.4
MONOCYTES_41
199.9
MONOCYTES_42
199.7
MONOCYTES_43
198.9
MONOCYTES_44
198.5
MONOCYTES_45
196.7
MONOCYTES_46
196.2
MONOCYTES_47
196.0
MONOCYTES_48
195.9
MONOCYTES_49
195.8
MONOCYTES_50
195.6
MONOCYTES_51
194.6
MONOCYTES_52
194.4
MONOCYTES_53
194.3
MONOCYTES_54
194.1
MONOCYTES_55
192.7
MONOCYTES_56
192.3
MONOCYTES_57
190.9
MONOCYTES_58
190.8
MONOCYTES_59
189.6
MONOCYTES_60
188.9
MONOCYTES_61
188.7
MONOCYTES_62
188.3
MONOCYTES_63
187.6
MONOCYTES_64
187.5
MONOCYTES_65
187.3
MONOCYTES_66
187.3
MONOCYTES_67
185.2
MONOCYTES_68
184.9
MONOCYTES_69
184.6
MONOCYTES_70
184.0
MONOCYTES_71
183.6
MONOCYTES_72
183.1
MONOCYTES_73
182.7
MONOCYTES_74
182.1
MONOCYTES_75
181.3
MONOCYTES_76
176.8
MONOCYTES_77
176.5
MONOCYTES_78
175.1
MONOCYTES_79
173.1
MONOCYTES_80
172.6
MONOCYTES_81
171.9
MONOCYTES_82
171.3
MONOCYTES_83
169.1
MONOCYTES_84
168.8
MONOCYTES_85
168.1
MONOCYTES_86
167.8
MONOCYTES_87
165.6
MONOCYTES_88
165.2
MONOCYTES_89
161.2
MONOCYTES_90
153.6
MONOCYTES_91
149.2
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Non-classical monocyte TPM: 189.8
Samples: 90
Max TPM: 262.2
Min TPM: 133.1
M2_1
262.2
M2_2
247.8
M2_3
247.3
M2_4
241.4
M2_5
238.5
M2_6
233.1
M2_7
231.1
M2_8
231.0
M2_9
230.8
M2_10
227.7
M2_11
223.9
M2_12
223.0
M2_13
221.2
M2_14
216.9
M2_15
213.3
M2_16
211.3
M2_17
211.0
M2_18
210.0
M2_19
203.5
M2_20
203.1
M2_21
202.2
M2_22
201.4
M2_23
199.8
M2_24
198.0
M2_25
197.5
M2_26
197.3
M2_27
196.7
M2_28
195.5
M2_29
194.5
M2_30
193.6
M2_31
193.5
M2_32
193.3
M2_33
193.1
M2_34
191.7
M2_35
191.0
M2_36
190.0
M2_37
188.1
M2_38
188.0
M2_39
187.4
M2_40
187.2
M2_41
187.2
M2_42
186.7
M2_43
186.5
M2_44
186.3
M2_45
185.0
M2_46
184.7
M2_47
183.4
M2_48
183.4
M2_49
183.1
M2_50
183.1
M2_51
182.3
M2_52
182.3
M2_53
182.2
M2_54
180.9
M2_55
180.7
M2_56
180.7
M2_57
180.2
M2_58
179.9
M2_59
179.8
M2_60
179.4
M2_61
178.6
M2_62
178.5
M2_63
178.3
M2_64
177.4
M2_65
176.4
M2_66
176.1
M2_67
173.6
M2_68
173.6
M2_69
173.4
M2_70
172.7
M2_71
172.6
M2_72
170.3
M2_73
170.2
M2_74
170.1
M2_75
169.9
M2_76
169.7
M2_77
169.5
M2_78
168.4
M2_79
167.1
M2_80
165.8
M2_81
164.9
M2_82
164.3
M2_83
163.9
M2_84
163.6
M2_85
158.0
M2_86
157.6
M2_87
157.1
M2_88
152.1
M2_89
149.3
M2_90
133.1
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