A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
54.3
nTPM
Monaco:
246.1
nTPM
Schmiedel:
70.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.3
HPA sample
nTPM
Memory B-cell nTPM: 54.3
Samples: 6
Max nTPM: 66.7
Min nTPM: 41.0
P10809_1017
59.8
P10809_1025
66.7
P10809_1044
50.7
P10809_1063
41.0
P10809_1092
65.1
P10809_1105
42.8
Naive B-cell nTPM: 46.8
Samples: 6
Max nTPM: 62.0
Min nTPM: 33.6
P10809_1011
44.3
P10809_1029
62.0
P10809_1048
33.6
P10809_1067
39.9
P10809_1091
48.8
P10809_1104
52.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
246.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 209.3
Samples: 4
Max nTPM: 240.3
Min nTPM: 183.4
RHH5310_R3677
209.2
RHH5218_R3590
183.4
RHH5247_R3619
240.3
RHH5276_R3648
204.4
Naive B-cell nTPM: 246.1
Samples: 4
Max nTPM: 432.5
Min nTPM: 166.8
RHH5308_R3675
166.8
RHH5216_R3588
432.5
RHH5245_R3617
200.3
RHH5274_R3646
184.9
Non-switched memory B-cell nTPM: 222.8
Samples: 4
Max nTPM: 259.3
Min nTPM: 196.2
RHH5309_R3676
196.2
RHH5217_R3589
259.3
RHH5246_R3618
230.5
RHH5275_R3647
205.2
Plasmablast nTPM: 178.1
Samples: 4
Max nTPM: 193.9
Min nTPM: 170.5
RHH5312_R3679
193.9
RHH5220_R3592
172.9
RHH5249_R3621
170.5
RHH5278_R3650
175.3
Switched memory B-cell nTPM: 194.6
Samples: 4
Max nTPM: 234.6
Min nTPM: 144.4
RHH5311_R3678
165.9
RHH5219_R3591
234.6
RHH5248_R3620
233.5
RHH5277_R3649
144.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.7
Schmiedel sample id
TPM
Naive B-cell TPM: 70.7
Samples: 91
Max TPM: 107.2
Min TPM: 53.3
B_CELL_NAIVE_1
107.2
B_CELL_NAIVE_2
104.5
B_CELL_NAIVE_3
96.3
B_CELL_NAIVE_4
91.5
B_CELL_NAIVE_5
88.6
B_CELL_NAIVE_6
88.5
B_CELL_NAIVE_7
86.2
B_CELL_NAIVE_8
85.0
B_CELL_NAIVE_9
83.8
B_CELL_NAIVE_10
82.2
B_CELL_NAIVE_11
82.1
B_CELL_NAIVE_12
81.9
B_CELL_NAIVE_13
80.0
B_CELL_NAIVE_14
80.0
B_CELL_NAIVE_15
79.7
B_CELL_NAIVE_16
78.4
B_CELL_NAIVE_17
77.2
B_CELL_NAIVE_18
77.2
B_CELL_NAIVE_19
75.7
B_CELL_NAIVE_20
75.5
B_CELL_NAIVE_21
75.4
B_CELL_NAIVE_22
75.1
B_CELL_NAIVE_23
75.0
B_CELL_NAIVE_24
75.0
B_CELL_NAIVE_25
74.8
B_CELL_NAIVE_26
74.4
B_CELL_NAIVE_27
74.1
B_CELL_NAIVE_28
74.0
B_CELL_NAIVE_29
73.8
B_CELL_NAIVE_30
73.3
B_CELL_NAIVE_31
72.9
B_CELL_NAIVE_32
72.5
B_CELL_NAIVE_33
72.5
B_CELL_NAIVE_34
72.0
B_CELL_NAIVE_35
72.0
B_CELL_NAIVE_36
71.9
B_CELL_NAIVE_37
71.8
B_CELL_NAIVE_38
71.6
B_CELL_NAIVE_39
71.4
B_CELL_NAIVE_40
71.3
B_CELL_NAIVE_41
71.2
B_CELL_NAIVE_42
71.0
B_CELL_NAIVE_43
70.8
B_CELL_NAIVE_44
70.5
B_CELL_NAIVE_45
70.3
B_CELL_NAIVE_46
69.7
B_CELL_NAIVE_47
69.2
B_CELL_NAIVE_48
69.0
B_CELL_NAIVE_49
68.6
B_CELL_NAIVE_50
68.6
B_CELL_NAIVE_51
68.1
B_CELL_NAIVE_52
68.1
B_CELL_NAIVE_53
67.9
B_CELL_NAIVE_54
67.8
B_CELL_NAIVE_55
67.8
B_CELL_NAIVE_56
67.8
B_CELL_NAIVE_57
67.6
B_CELL_NAIVE_58
67.5
B_CELL_NAIVE_59
67.4
B_CELL_NAIVE_60
67.4
B_CELL_NAIVE_61
67.2
B_CELL_NAIVE_62
67.1
B_CELL_NAIVE_63
66.5
B_CELL_NAIVE_64
65.6
B_CELL_NAIVE_65
65.0
B_CELL_NAIVE_66
64.8
B_CELL_NAIVE_67
64.4
B_CELL_NAIVE_68
64.3
B_CELL_NAIVE_69
64.1
B_CELL_NAIVE_70
64.0
B_CELL_NAIVE_71
63.6
B_CELL_NAIVE_72
63.1
B_CELL_NAIVE_73
62.9
B_CELL_NAIVE_74
62.2
B_CELL_NAIVE_75
61.9
B_CELL_NAIVE_76
61.8
B_CELL_NAIVE_77
61.8
B_CELL_NAIVE_78
61.8
B_CELL_NAIVE_79
61.2
B_CELL_NAIVE_80
59.7
B_CELL_NAIVE_81
59.4
B_CELL_NAIVE_82
59.1
B_CELL_NAIVE_83
59.1
B_CELL_NAIVE_84
57.2
B_CELL_NAIVE_85
56.8
B_CELL_NAIVE_86
56.4
B_CELL_NAIVE_87
56.2
B_CELL_NAIVE_88
56.1
B_CELL_NAIVE_89
55.7
B_CELL_NAIVE_90
53.3
B_CELL_NAIVE_91
53.3
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The Human Protein Atlas project is funded
