A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
133.2
nTPM
Monaco:
634.9
nTPM
Schmiedel:
116.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
133.2
HPA sample
nTPM
Classical monocyte nTPM: 115.5
Samples: 6
Max nTPM: 178.6
Min nTPM: 83.2
P10809_1003
178.6
P10809_1020
141.7
P10809_1039
113.1
P10809_1058
84.8
P10809_1080
83.2
P10809_1107
91.5
Intermediate monocyte nTPM: 122.0
Samples: 6
Max nTPM: 141.3
Min nTPM: 91.6
P10809_1004
123.3
P10809_1023
141.1
P10809_1042
132.0
P10809_1061
141.3
P10809_1081
102.9
P10809_1108
91.6
Non-classical monocyte nTPM: 133.2
Samples: 5
Max nTPM: 169.4
Min nTPM: 97.1
P10809_1005
169.4
P10809_1053
157.9
P10809_1072
127.0
P10809_1082
97.1
P10809_1109
114.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
634.9
Monaco sample
nTPM
Classical monocyte nTPM: 553.6
Samples: 4
Max nTPM: 815.1
Min nTPM: 445.5
RHH5313_R3680
445.5
RHH5221_R3593
815.1
RHH5250_R3622
491.3
RHH5279_R3651
462.5
Intermediate monocyte nTPM: 538.5
Samples: 4
Max nTPM: 703.7
Min nTPM: 448.4
RHH5314_R3681
489.8
RHH5222_R3594
703.7
RHH5251_R3623
448.4
RHH5280_R3652
512.0
Non-classical monocyte nTPM: 634.9
Samples: 4
Max nTPM: 828.2
Min nTPM: 528.9
RHH5315_R3682
565.7
RHH5223_R3595
828.2
RHH5252_R3624
616.9
RHH5281_R3653
528.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.4
Schmiedel sample id
TPM
Classical monocyte TPM: 94.9
Samples: 91
Max TPM: 119.6
Min TPM: 73.5
MONOCYTES_1
119.6
MONOCYTES_2
118.7
MONOCYTES_3
118.4
MONOCYTES_4
114.8
MONOCYTES_5
114.3
MONOCYTES_6
112.7
MONOCYTES_7
111.6
MONOCYTES_8
111.0
MONOCYTES_9
110.5
MONOCYTES_10
110.0
MONOCYTES_11
108.8
MONOCYTES_12
108.3
MONOCYTES_13
108.2
MONOCYTES_14
107.5
MONOCYTES_15
106.8
MONOCYTES_16
106.2
MONOCYTES_17
106.1
MONOCYTES_18
105.8
MONOCYTES_19
105.2
MONOCYTES_20
105.1
MONOCYTES_21
104.2
MONOCYTES_22
104.1
MONOCYTES_23
103.3
MONOCYTES_24
103.0
MONOCYTES_25
102.6
MONOCYTES_26
102.5
MONOCYTES_27
101.5
MONOCYTES_28
101.4
MONOCYTES_29
101.1
MONOCYTES_30
101.0
MONOCYTES_31
100.9
MONOCYTES_32
100.8
MONOCYTES_33
100.1
MONOCYTES_34
99.8
MONOCYTES_35
99.4
MONOCYTES_36
99.3
MONOCYTES_37
99.3
MONOCYTES_38
99.0
MONOCYTES_39
98.7
MONOCYTES_40
97.6
MONOCYTES_41
97.4
MONOCYTES_42
97.1
MONOCYTES_43
97.0
MONOCYTES_44
96.9
MONOCYTES_45
96.6
MONOCYTES_46
95.8
MONOCYTES_47
95.6
MONOCYTES_48
95.6
MONOCYTES_49
95.4
MONOCYTES_50
94.6
MONOCYTES_51
94.6
MONOCYTES_52
91.6
MONOCYTES_53
90.9
MONOCYTES_54
89.5
MONOCYTES_55
89.3
MONOCYTES_56
88.7
MONOCYTES_57
88.0
MONOCYTES_58
87.4
MONOCYTES_59
87.3
MONOCYTES_60
87.2
MONOCYTES_61
86.9
MONOCYTES_62
86.7
MONOCYTES_63
86.4
MONOCYTES_64
86.0
MONOCYTES_65
85.8
MONOCYTES_66
85.7
MONOCYTES_67
85.4
MONOCYTES_68
85.2
MONOCYTES_69
85.1
MONOCYTES_70
84.5
MONOCYTES_71
84.5
MONOCYTES_72
84.3
MONOCYTES_73
84.1
MONOCYTES_74
83.8
MONOCYTES_75
83.5
MONOCYTES_76
83.0
MONOCYTES_77
82.9
MONOCYTES_78
82.8
MONOCYTES_79
82.5
MONOCYTES_80
81.7
MONOCYTES_81
81.3
MONOCYTES_82
80.9
MONOCYTES_83
80.1
MONOCYTES_84
80.0
MONOCYTES_85
78.9
MONOCYTES_86
78.0
MONOCYTES_87
77.7
MONOCYTES_88
77.5
MONOCYTES_89
77.2
MONOCYTES_90
74.6
MONOCYTES_91
73.5
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Non-classical monocyte TPM: 116.4
Samples: 90
Max TPM: 162.5
Min TPM: 90.2
M2_1
162.5
M2_2
158.0
M2_3
154.7
M2_4
151.7
M2_5
146.8
M2_6
143.3
M2_7
141.8
M2_8
140.8
M2_9
137.9
M2_10
136.5
M2_11
136.2
M2_12
135.4
M2_13
133.7
M2_14
133.4
M2_15
133.2
M2_16
131.5
M2_17
131.2
M2_18
130.7
M2_19
130.3
M2_20
129.9
M2_21
127.0
M2_22
125.8
M2_23
122.9
M2_24
122.3
M2_25
121.8
M2_26
121.6
M2_27
121.5
M2_28
121.3
M2_29
121.2
M2_30
121.2
M2_31
119.9
M2_32
119.1
M2_33
118.6
M2_34
118.5
M2_35
118.1
M2_36
117.7
M2_37
117.7
M2_38
117.3
M2_39
116.9
M2_40
116.1
M2_41
115.4
M2_42
115.4
M2_43
115.0
M2_44
114.5
M2_45
114.1
M2_46
113.9
M2_47
113.8
M2_48
113.3
M2_49
112.2
M2_50
112.2
M2_51
111.5
M2_52
110.9
M2_53
110.7
M2_54
110.0
M2_55
109.9
M2_56
109.5
M2_57
109.4
M2_58
108.8
M2_59
108.1
M2_60
108.0
M2_61
107.9
M2_62
106.9
M2_63
106.1
M2_64
105.8
M2_65
105.8
M2_66
105.7
M2_67
105.7
M2_68
104.2
M2_69
103.8
M2_70
103.8
M2_71
103.2
M2_72
102.6
M2_73
102.3
M2_74
102.2
M2_75
101.8
M2_76
101.3
M2_77
100.7
M2_78
100.5
M2_79
100.2
M2_80
100.1
M2_81
99.6
M2_82
99.3
M2_83
99.0
M2_84
98.4
M2_85
98.0
M2_86
95.6
M2_87
95.4
M2_88
94.8
M2_89
91.4
M2_90
90.2
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