A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
105.5
nTPM
Monaco:
282.0
nTPM
Schmiedel:
71.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.5
HPA sample
nTPM
NK-cell nTPM: 105.5
Samples: 6
Max nTPM: 122.1
Min nTPM: 86.0
P10809_1013
102.8
P10809_1033
99.2
P10809_1052
103.1
P10809_1071
86.0
P10809_1093
119.9
P10809_1103
122.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
282.0
Monaco sample
nTPM
NK-cell nTPM: 282.0
Samples: 4
Max nTPM: 399.0
Min nTPM: 210.4
RHH5316_R3683
210.4
RHH5224_R3596
399.0
RHH5253_R3625
279.4
RHH5282_R3654
239.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.0
Schmiedel sample id
TPM
NK-cell TPM: 71.0
Samples: 90
Max TPM: 97.3
Min TPM: 48.4
NK_1
97.3
NK_2
94.5
NK_3
92.1
NK_4
90.8
NK_5
90.2
NK_6
87.1
NK_7
86.0
NK_8
85.9
NK_9
83.4
NK_10
82.3
NK_11
82.1
NK_12
81.3
NK_13
81.0
NK_14
80.0
NK_15
79.1
NK_16
78.5
NK_17
78.3
NK_18
77.8
NK_19
77.3
NK_20
77.0
NK_21
76.3
NK_22
75.9
NK_23
75.8
NK_24
74.9
NK_25
74.7
NK_26
73.9
NK_27
73.7
NK_28
73.4
NK_29
73.3
NK_30
73.1
NK_31
73.1
NK_32
72.8
NK_33
72.8
NK_34
72.7
NK_35
72.0
NK_36
71.7
NK_37
71.5
NK_38
71.5
NK_39
71.3
NK_40
71.1
NK_41
71.0
NK_42
70.9
NK_43
70.5
NK_44
70.2
NK_45
70.0
NK_46
70.0
NK_47
69.4
NK_48
69.1
NK_49
68.5
NK_50
68.4
NK_51
68.2
NK_52
68.1
NK_53
68.0
NK_54
67.7
NK_55
67.6
NK_56
67.4
NK_57
67.2
NK_58
67.1
NK_59
66.3
NK_60
66.2
NK_61
66.0
NK_62
65.8
NK_63
65.5
NK_64
65.2
NK_65
64.9
NK_66
64.8
NK_67
64.5
NK_68
64.5
NK_69
64.1
NK_70
63.9
NK_71
63.8
NK_72
63.6
NK_73
63.5
NK_74
63.5
NK_75
63.3
NK_76
62.9
NK_77
62.3
NK_78
62.3
NK_79
62.1
NK_80
62.1
NK_81
61.7
NK_82
61.3
NK_83
61.3
NK_84
60.6
NK_85
60.5
NK_86
59.5
NK_87
59.4
NK_88
58.8
NK_89
57.6
NK_90
48.4
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