CALCOCO2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • CALCOCO2
IMMUNE CELL NK-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
Nk-cells
Immune cell methods
NK-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:105.5 nTPM
Monaco:282.0 nTPM
Schmiedel:71.0 TPM

NK-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

105.5
HPA sample nTPM
NK-cell
nTPM: 105.5
Samples: 6

Max nTPM: 122.1
Min nTPM: 86.0
P10809_1013 102.8
P10809_1033 99.2
P10809_1052 103.1
P10809_1071 86.0
P10809_1093 119.9
P10809_1103 122.1

NK-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

282.0
Monaco sample nTPM
NK-cell
nTPM: 282.0
Samples: 4

Max nTPM: 399.0
Min nTPM: 210.4
RHH5316_R3683 210.4
RHH5224_R3596 399.0
RHH5253_R3625 279.4
RHH5282_R3654 239.1

NK-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

71.0
Schmiedel sample id TPM
NK-cell
TPM: 71.0
Samples: 90

Max TPM: 97.3
Min TPM: 48.4
NK_1 97.3
NK_2 94.5
NK_3 92.1
NK_4 90.8
NK_5 90.2
NK_6 87.1
NK_7 86.0
NK_8 85.9
NK_9 83.4
NK_10 82.3
NK_11 82.1
NK_12 81.3
NK_13 81.0
NK_14 80.0
NK_15 79.1
NK_16 78.5
NK_17 78.3
NK_18 77.8
NK_19 77.3
NK_20 77.0
NK_21 76.3
NK_22 75.9
NK_23 75.8
NK_24 74.9
NK_25 74.7
NK_26 73.9
NK_27 73.7
NK_28 73.4
NK_29 73.3
NK_30 73.1
NK_31 73.1
NK_32 72.8
NK_33 72.8
NK_34 72.7
NK_35 72.0
NK_36 71.7
NK_37 71.5
NK_38 71.5
NK_39 71.3
NK_40 71.1
NK_41 71.0
NK_42 70.9
NK_43 70.5
NK_44 70.2
NK_45 70.0
NK_46 70.0
NK_47 69.4
NK_48 69.1
NK_49 68.5
NK_50 68.4
NK_51 68.2
NK_52 68.1
NK_53 68.0
NK_54 67.7
NK_55 67.6
NK_56 67.4
NK_57 67.2
NK_58 67.1
NK_59 66.3
NK_60 66.2
NK_61 66.0
NK_62 65.8
NK_63 65.5
NK_64 65.2
NK_65 64.9
NK_66 64.8
NK_67 64.5
NK_68 64.5
NK_69 64.1
NK_70 63.9
NK_71 63.8
NK_72 63.6
NK_73 63.5
NK_74 63.5
NK_75 63.3
NK_76 62.9
NK_77 62.3
NK_78 62.3
NK_79 62.1
NK_80 62.1
NK_81 61.7
NK_82 61.3
NK_83 61.3
NK_84 60.6
NK_85 60.5
NK_86 59.5
NK_87 59.4
NK_88 58.8
NK_89 57.6
NK_90 48.4
Show allShow less

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.