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BETA
  • SUMMARY

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  • BRAIN

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  • IMMUNE

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  • RPL35
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:4477.3 nTPM
Monaco:335.3 nTPM
Schmiedel:390.2 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

4477.3
HPA sample nTPM
Memory B-cell
nTPM: 4477.4
Samples: 6

Max nTPM: 9426.0
Min nTPM: 2575.3
P10809_1017 2575.3
P10809_1025 3766.1
P10809_1044 9426.0
P10809_1063 3546.6
P10809_1092 3551.2
P10809_1105 3998.9
Naive B-cell
nTPM: 4122.1
Samples: 6

Max nTPM: 7462.1
Min nTPM: 2693.6
P10809_1011 2693.6
P10809_1029 3617.0
P10809_1048 7462.1
P10809_1067 3658.2
P10809_1091 3314.8
P10809_1104 3986.7

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

335.3
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 335.3
Samples: 4

Max nTPM: 535.0
Min nTPM: 69.7
RHH5310_R3677 276.0
RHH5218_R3590 69.7
RHH5247_R3619 535.0
RHH5276_R3648 460.4
Naive B-cell
nTPM: 302.2
Samples: 4

Max nTPM: 535.1
Min nTPM: 90.8
RHH5308_R3675 338.9
RHH5216_R3588 90.8
RHH5245_R3617 535.1
RHH5274_R3646 244.0
Non-switched memory B-cell
nTPM: 230.8
Samples: 4

Max nTPM: 452.8
Min nTPM: 92.4
RHH5309_R3676 278.0
RHH5217_R3589 100.0
RHH5246_R3618 92.4
RHH5275_R3647 452.8
Plasmablast
nTPM: 285.7
Samples: 4

Max nTPM: 362.0
Min nTPM: 154.1
RHH5312_R3679 337.1
RHH5220_R3592 154.1
RHH5249_R3621 289.4
RHH5278_R3650 362.0
Switched memory B-cell
nTPM: 203.0
Samples: 4

Max nTPM: 325.6
Min nTPM: 108.8
RHH5311_R3678 225.6
RHH5219_R3591 151.8
RHH5248_R3620 108.8
RHH5277_R3649 325.6

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

390.2
Schmiedel sample id TPM
Naive B-cell
TPM: 390.2
Samples: 91

Max TPM: 788.7
Min TPM: 35.4
B_CELL_NAIVE_1 788.7
B_CELL_NAIVE_2 652.4
B_CELL_NAIVE_3 651.1
B_CELL_NAIVE_4 630.6
B_CELL_NAIVE_5 622.9
B_CELL_NAIVE_6 621.8
B_CELL_NAIVE_7 621.3
B_CELL_NAIVE_8 617.1
B_CELL_NAIVE_9 610.9
B_CELL_NAIVE_10 602.8
B_CELL_NAIVE_11 590.9
B_CELL_NAIVE_12 585.9
B_CELL_NAIVE_13 583.0
B_CELL_NAIVE_14 580.6
B_CELL_NAIVE_15 577.4
B_CELL_NAIVE_16 538.4
B_CELL_NAIVE_17 536.1
B_CELL_NAIVE_18 536.0
B_CELL_NAIVE_19 526.3
B_CELL_NAIVE_20 521.3
B_CELL_NAIVE_21 513.8
B_CELL_NAIVE_22 500.5
B_CELL_NAIVE_23 499.4
B_CELL_NAIVE_24 498.1
B_CELL_NAIVE_25 497.7
B_CELL_NAIVE_26 494.8
B_CELL_NAIVE_27 493.1
B_CELL_NAIVE_28 485.4
B_CELL_NAIVE_29 482.4
B_CELL_NAIVE_30 479.1
B_CELL_NAIVE_31 478.9
B_CELL_NAIVE_32 476.2
B_CELL_NAIVE_33 468.5
B_CELL_NAIVE_34 467.5
B_CELL_NAIVE_35 463.1
B_CELL_NAIVE_36 462.7
B_CELL_NAIVE_37 461.9
B_CELL_NAIVE_38 456.4
B_CELL_NAIVE_39 453.7
B_CELL_NAIVE_40 453.4
B_CELL_NAIVE_41 444.8
B_CELL_NAIVE_42 440.5
B_CELL_NAIVE_43 434.3
B_CELL_NAIVE_44 417.6
B_CELL_NAIVE_45 415.7
B_CELL_NAIVE_46 404.5
B_CELL_NAIVE_47 402.1
B_CELL_NAIVE_48 392.1
B_CELL_NAIVE_49 387.2
B_CELL_NAIVE_50 373.2
B_CELL_NAIVE_51 369.8
B_CELL_NAIVE_52 368.2
B_CELL_NAIVE_53 363.7
B_CELL_NAIVE_54 362.9
B_CELL_NAIVE_55 362.0
B_CELL_NAIVE_56 349.8
B_CELL_NAIVE_57 343.0
B_CELL_NAIVE_58 343.0
B_CELL_NAIVE_59 341.6
B_CELL_NAIVE_60 340.8
B_CELL_NAIVE_61 333.2
B_CELL_NAIVE_62 331.9
B_CELL_NAIVE_63 310.6
B_CELL_NAIVE_64 301.8
B_CELL_NAIVE_65 291.9
B_CELL_NAIVE_66 290.8
B_CELL_NAIVE_67 281.6
B_CELL_NAIVE_68 278.3
B_CELL_NAIVE_69 273.1
B_CELL_NAIVE_70 266.0
B_CELL_NAIVE_71 259.6
B_CELL_NAIVE_72 256.7
B_CELL_NAIVE_73 248.7
B_CELL_NAIVE_74 229.3
B_CELL_NAIVE_75 211.4
B_CELL_NAIVE_76 203.5
B_CELL_NAIVE_77 202.6
B_CELL_NAIVE_78 195.8
B_CELL_NAIVE_79 183.0
B_CELL_NAIVE_80 181.8
B_CELL_NAIVE_81 165.7
B_CELL_NAIVE_82 153.3
B_CELL_NAIVE_83 143.4
B_CELL_NAIVE_84 130.2
B_CELL_NAIVE_85 113.1
B_CELL_NAIVE_86 110.0
B_CELL_NAIVE_87 87.6
B_CELL_NAIVE_88 78.0
B_CELL_NAIVE_89 61.4
B_CELL_NAIVE_90 56.9
B_CELL_NAIVE_91 35.4
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