A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4477.3
nTPM
Monaco:
335.3
nTPM
Schmiedel:
390.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4477.3
HPA sample
nTPM
Memory B-cell nTPM: 4477.4
Samples: 6
Max nTPM: 9426.0
Min nTPM: 2575.3
P10809_1017
2575.3
P10809_1025
3766.1
P10809_1044
9426.0
P10809_1063
3546.6
P10809_1092
3551.2
P10809_1105
3998.9
Naive B-cell nTPM: 4122.1
Samples: 6
Max nTPM: 7462.1
Min nTPM: 2693.6
P10809_1011
2693.6
P10809_1029
3617.0
P10809_1048
7462.1
P10809_1067
3658.2
P10809_1091
3314.8
P10809_1104
3986.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
335.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 335.3
Samples: 4
Max nTPM: 535.0
Min nTPM: 69.7
RHH5310_R3677
276.0
RHH5218_R3590
69.7
RHH5247_R3619
535.0
RHH5276_R3648
460.4
Naive B-cell nTPM: 302.2
Samples: 4
Max nTPM: 535.1
Min nTPM: 90.8
RHH5308_R3675
338.9
RHH5216_R3588
90.8
RHH5245_R3617
535.1
RHH5274_R3646
244.0
Non-switched memory B-cell nTPM: 230.8
Samples: 4
Max nTPM: 452.8
Min nTPM: 92.4
RHH5309_R3676
278.0
RHH5217_R3589
100.0
RHH5246_R3618
92.4
RHH5275_R3647
452.8
Plasmablast nTPM: 285.7
Samples: 4
Max nTPM: 362.0
Min nTPM: 154.1
RHH5312_R3679
337.1
RHH5220_R3592
154.1
RHH5249_R3621
289.4
RHH5278_R3650
362.0
Switched memory B-cell nTPM: 203.0
Samples: 4
Max nTPM: 325.6
Min nTPM: 108.8
RHH5311_R3678
225.6
RHH5219_R3591
151.8
RHH5248_R3620
108.8
RHH5277_R3649
325.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
390.2
Schmiedel sample id
TPM
Naive B-cell TPM: 390.2
Samples: 91
Max TPM: 788.7
Min TPM: 35.4
B_CELL_NAIVE_1
788.7
B_CELL_NAIVE_2
652.4
B_CELL_NAIVE_3
651.1
B_CELL_NAIVE_4
630.6
B_CELL_NAIVE_5
622.9
B_CELL_NAIVE_6
621.8
B_CELL_NAIVE_7
621.3
B_CELL_NAIVE_8
617.1
B_CELL_NAIVE_9
610.9
B_CELL_NAIVE_10
602.8
B_CELL_NAIVE_11
590.9
B_CELL_NAIVE_12
585.9
B_CELL_NAIVE_13
583.0
B_CELL_NAIVE_14
580.6
B_CELL_NAIVE_15
577.4
B_CELL_NAIVE_16
538.4
B_CELL_NAIVE_17
536.1
B_CELL_NAIVE_18
536.0
B_CELL_NAIVE_19
526.3
B_CELL_NAIVE_20
521.3
B_CELL_NAIVE_21
513.8
B_CELL_NAIVE_22
500.5
B_CELL_NAIVE_23
499.4
B_CELL_NAIVE_24
498.1
B_CELL_NAIVE_25
497.7
B_CELL_NAIVE_26
494.8
B_CELL_NAIVE_27
493.1
B_CELL_NAIVE_28
485.4
B_CELL_NAIVE_29
482.4
B_CELL_NAIVE_30
479.1
B_CELL_NAIVE_31
478.9
B_CELL_NAIVE_32
476.2
B_CELL_NAIVE_33
468.5
B_CELL_NAIVE_34
467.5
B_CELL_NAIVE_35
463.1
B_CELL_NAIVE_36
462.7
B_CELL_NAIVE_37
461.9
B_CELL_NAIVE_38
456.4
B_CELL_NAIVE_39
453.7
B_CELL_NAIVE_40
453.4
B_CELL_NAIVE_41
444.8
B_CELL_NAIVE_42
440.5
B_CELL_NAIVE_43
434.3
B_CELL_NAIVE_44
417.6
B_CELL_NAIVE_45
415.7
B_CELL_NAIVE_46
404.5
B_CELL_NAIVE_47
402.1
B_CELL_NAIVE_48
392.1
B_CELL_NAIVE_49
387.2
B_CELL_NAIVE_50
373.2
B_CELL_NAIVE_51
369.8
B_CELL_NAIVE_52
368.2
B_CELL_NAIVE_53
363.7
B_CELL_NAIVE_54
362.9
B_CELL_NAIVE_55
362.0
B_CELL_NAIVE_56
349.8
B_CELL_NAIVE_57
343.0
B_CELL_NAIVE_58
343.0
B_CELL_NAIVE_59
341.6
B_CELL_NAIVE_60
340.8
B_CELL_NAIVE_61
333.2
B_CELL_NAIVE_62
331.9
B_CELL_NAIVE_63
310.6
B_CELL_NAIVE_64
301.8
B_CELL_NAIVE_65
291.9
B_CELL_NAIVE_66
290.8
B_CELL_NAIVE_67
281.6
B_CELL_NAIVE_68
278.3
B_CELL_NAIVE_69
273.1
B_CELL_NAIVE_70
266.0
B_CELL_NAIVE_71
259.6
B_CELL_NAIVE_72
256.7
B_CELL_NAIVE_73
248.7
B_CELL_NAIVE_74
229.3
B_CELL_NAIVE_75
211.4
B_CELL_NAIVE_76
203.5
B_CELL_NAIVE_77
202.6
B_CELL_NAIVE_78
195.8
B_CELL_NAIVE_79
183.0
B_CELL_NAIVE_80
181.8
B_CELL_NAIVE_81
165.7
B_CELL_NAIVE_82
153.3
B_CELL_NAIVE_83
143.4
B_CELL_NAIVE_84
130.2
B_CELL_NAIVE_85
113.1
B_CELL_NAIVE_86
110.0
B_CELL_NAIVE_87
87.6
B_CELL_NAIVE_88
78.0
B_CELL_NAIVE_89
61.4
B_CELL_NAIVE_90
56.9
B_CELL_NAIVE_91
35.4
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