A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1777.6
nTPM
Monaco:
192.2
nTPM
Schmiedel:
246.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1777.6
HPA sample
nTPM
Classical monocyte nTPM: 1777.6
Samples: 6
Max nTPM: 2186.9
Min nTPM: 1235.5
P10809_1003
2152.0
P10809_1020
1475.1
P10809_1039
2126.3
P10809_1058
1489.6
P10809_1080
1235.5
P10809_1107
2186.9
Intermediate monocyte nTPM: 1607.7
Samples: 6
Max nTPM: 2676.0
Min nTPM: 1106.2
P10809_1004
1120.5
P10809_1023
1857.9
P10809_1042
1652.3
P10809_1061
1106.2
P10809_1081
1233.2
P10809_1108
2676.0
Non-classical monocyte nTPM: 1360.5
Samples: 5
Max nTPM: 2018.7
Min nTPM: 1069.3
P10809_1005
1116.3
P10809_1053
1371.2
P10809_1072
1227.2
P10809_1082
1069.3
P10809_1109
2018.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
192.2
Monaco sample
nTPM
Classical monocyte nTPM: 100.8
Samples: 4
Max nTPM: 144.9
Min nTPM: 78.3
RHH5313_R3680
144.9
RHH5221_R3593
78.3
RHH5250_R3622
78.5
RHH5279_R3651
101.5
Intermediate monocyte nTPM: 192.2
Samples: 4
Max nTPM: 242.2
Min nTPM: 121.7
RHH5314_R3681
192.0
RHH5222_R3594
242.2
RHH5251_R3623
212.8
RHH5280_R3652
121.7
Non-classical monocyte nTPM: 122.4
Samples: 4
Max nTPM: 170.8
Min nTPM: 62.3
RHH5315_R3682
170.8
RHH5223_R3595
112.0
RHH5252_R3624
144.5
RHH5281_R3653
62.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
246.0
Schmiedel sample id
TPM
Classical monocyte TPM: 246.0
Samples: 91
Max TPM: 398.9
Min TPM: 92.5
MONOCYTES_1
398.9
MONOCYTES_2
394.5
MONOCYTES_3
352.6
MONOCYTES_4
350.7
MONOCYTES_5
349.8
MONOCYTES_6
337.6
MONOCYTES_7
336.8
MONOCYTES_8
334.4
MONOCYTES_9
332.8
MONOCYTES_10
332.1
MONOCYTES_11
331.2
MONOCYTES_12
330.3
MONOCYTES_13
327.6
MONOCYTES_14
324.9
MONOCYTES_15
323.4
MONOCYTES_16
314.8
MONOCYTES_17
314.7
MONOCYTES_18
311.2
MONOCYTES_19
308.7
MONOCYTES_20
308.4
MONOCYTES_21
307.7
MONOCYTES_22
302.5
MONOCYTES_23
302.4
MONOCYTES_24
301.7
MONOCYTES_25
300.1
MONOCYTES_26
299.0
MONOCYTES_27
295.8
MONOCYTES_28
290.5
MONOCYTES_29
287.9
MONOCYTES_30
287.9
MONOCYTES_31
287.7
MONOCYTES_32
287.1
MONOCYTES_33
286.8
MONOCYTES_34
283.4
MONOCYTES_35
281.5
MONOCYTES_36
279.4
MONOCYTES_37
275.4
MONOCYTES_38
272.2
MONOCYTES_39
263.5
MONOCYTES_40
259.0
MONOCYTES_41
258.3
MONOCYTES_42
257.6
MONOCYTES_43
254.7
MONOCYTES_44
254.7
MONOCYTES_45
253.4
MONOCYTES_46
252.5
MONOCYTES_47
252.2
MONOCYTES_48
248.3
MONOCYTES_49
244.8
MONOCYTES_50
240.3
MONOCYTES_51
237.8
MONOCYTES_52
237.7
MONOCYTES_53
234.1
MONOCYTES_54
226.9
MONOCYTES_55
226.1
MONOCYTES_56
225.2
MONOCYTES_57
225.1
MONOCYTES_58
221.4
MONOCYTES_59
218.9
MONOCYTES_60
214.1
MONOCYTES_61
213.8
MONOCYTES_62
213.3
MONOCYTES_63
208.2
MONOCYTES_64
206.9
MONOCYTES_65
203.6
MONOCYTES_66
203.4
MONOCYTES_67
202.8
MONOCYTES_68
200.1
MONOCYTES_69
197.3
MONOCYTES_70
196.6
MONOCYTES_71
188.0
MONOCYTES_72
186.1
MONOCYTES_73
182.5
MONOCYTES_74
175.9
MONOCYTES_75
174.0
MONOCYTES_76
172.7
MONOCYTES_77
168.7
MONOCYTES_78
164.5
MONOCYTES_79
156.6
MONOCYTES_80
147.6
MONOCYTES_81
143.7
MONOCYTES_82
140.5
MONOCYTES_83
139.2
MONOCYTES_84
136.0
MONOCYTES_85
135.3
MONOCYTES_86
133.0
MONOCYTES_87
124.4
MONOCYTES_88
115.5
MONOCYTES_89
111.2
MONOCYTES_90
104.2
MONOCYTES_91
92.5
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Non-classical monocyte TPM: 180.3
Samples: 90
Max TPM: 398.7
Min TPM: 35.5
M2_1
398.7
M2_2
322.2
M2_3
319.2
M2_4
295.5
M2_5
293.2
M2_6
290.3
M2_7
286.2
M2_8
276.4
M2_9
273.1
M2_10
269.3
M2_11
268.6
M2_12
254.5
M2_13
254.3
M2_14
252.4
M2_15
251.5
M2_16
250.9
M2_17
249.9
M2_18
248.1
M2_19
247.5
M2_20
242.4
M2_21
240.4
M2_22
238.8
M2_23
236.4
M2_24
235.7
M2_25
231.5
M2_26
226.0
M2_27
223.8
M2_28
223.1
M2_29
218.3
M2_30
217.8
M2_31
217.1
M2_32
214.4
M2_33
213.1
M2_34
209.1
M2_35
206.1
M2_36
205.7
M2_37
203.8
M2_38
202.5
M2_39
201.3
M2_40
200.7
M2_41
199.9
M2_42
197.0
M2_43
196.9
M2_44
196.1
M2_45
194.8
M2_46
190.5
M2_47
190.3
M2_48
190.1
M2_49
188.4
M2_50
183.7
M2_51
181.2
M2_52
180.5
M2_53
179.7
M2_54
172.5
M2_55
168.3
M2_56
167.1
M2_57
158.8
M2_58
154.9
M2_59
154.0
M2_60
150.7
M2_61
148.9
M2_62
137.9
M2_63
130.5
M2_64
128.4
M2_65
125.3
M2_66
124.9
M2_67
124.7
M2_68
117.0
M2_69
112.2
M2_70
112.2
M2_71
110.3
M2_72
101.2
M2_73
96.4
M2_74
94.5
M2_75
93.7
M2_76
88.4
M2_77
87.8
M2_78
86.7
M2_79
86.0
M2_80
78.9
M2_81
72.8
M2_82
69.6
M2_83
63.9
M2_84
60.0
M2_85
59.3
M2_86
46.6
M2_87
46.2
M2_88
40.4
M2_89
38.6
M2_90
35.5
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