A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2421.4
nTPM
Monaco:
128.7
nTPM
Schmiedel:
305.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2421.4
HPA sample
nTPM
NK-cell nTPM: 2421.4
Samples: 6
Max nTPM: 3148.7
Min nTPM: 1473.1
P10809_1013
1473.1
P10809_1033
3148.7
P10809_1052
2641.9
P10809_1071
2778.0
P10809_1093
1581.4
P10809_1103
2905.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
128.7
Monaco sample
nTPM
NK-cell nTPM: 128.7
Samples: 4
Max nTPM: 142.3
Min nTPM: 93.7
RHH5316_R3683
142.3
RHH5224_R3596
93.7
RHH5253_R3625
140.0
RHH5282_R3654
138.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
305.7
Schmiedel sample id
TPM
NK-cell TPM: 305.7
Samples: 90
Max TPM: 578.1
Min TPM: 52.6
NK_1
578.1
NK_2
565.6
NK_3
550.9
NK_4
486.2
NK_5
474.9
NK_6
468.5
NK_7
467.3
NK_8
460.7
NK_9
453.8
NK_10
450.7
NK_11
445.0
NK_12
431.8
NK_13
427.9
NK_14
427.4
NK_15
427.4
NK_16
427.4
NK_17
419.8
NK_18
416.5
NK_19
415.4
NK_20
415.3
NK_21
414.5
NK_22
409.4
NK_23
407.4
NK_24
403.7
NK_25
403.6
NK_26
398.4
NK_27
397.1
NK_28
393.3
NK_29
392.7
NK_30
391.4
NK_31
390.3
NK_32
389.9
NK_33
374.9
NK_34
372.8
NK_35
355.0
NK_36
351.1
NK_37
348.6
NK_38
348.4
NK_39
348.0
NK_40
346.2
NK_41
344.5
NK_42
335.7
NK_43
319.1
NK_44
312.4
NK_45
312.3
NK_46
307.9
NK_47
298.3
NK_48
294.0
NK_49
290.2
NK_50
279.9
NK_51
275.9
NK_52
262.0
NK_53
259.7
NK_54
258.9
NK_55
253.9
NK_56
250.4
NK_57
249.0
NK_58
246.7
NK_59
241.7
NK_60
239.0
NK_61
237.1
NK_62
234.1
NK_63
234.0
NK_64
229.2
NK_65
224.0
NK_66
218.6
NK_67
218.3
NK_68
208.7
NK_69
207.5
NK_70
204.3
NK_71
199.1
NK_72
193.8
NK_73
193.4
NK_74
185.4
NK_75
179.6
NK_76
178.3
NK_77
168.9
NK_78
161.6
NK_79
161.0
NK_80
160.8
NK_81
145.1
NK_82
131.6
NK_83
124.9
NK_84
123.1
NK_85
117.6
NK_86
96.8
NK_87
90.1
NK_88
84.9
NK_89
68.6
NK_90
52.6
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