A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.7
nTPM
Monaco:
45.1
nTPM
Schmiedel:
125.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.7
HPA sample
nTPM
Memory B-cell nTPM: 3.5
Samples: 6
Max nTPM: 6.1
Min nTPM: 0.0
P10809_1017
6.1
P10809_1025
5.2
P10809_1044
0.0
P10809_1063
3.6
P10809_1092
2.8
P10809_1105
3.5
Naive B-cell nTPM: 3.7
Samples: 6
Max nTPM: 5.6
Min nTPM: 2.1
P10809_1011
5.6
P10809_1029
4.1
P10809_1048
2.1
P10809_1067
3.7
P10809_1091
3.8
P10809_1104
2.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 39.3
Samples: 4
Max nTPM: 42.4
Min nTPM: 36.0
RHH5310_R3677
37.3
RHH5218_R3590
42.4
RHH5247_R3619
36.0
RHH5276_R3648
41.7
Naive B-cell nTPM: 42.6
Samples: 4
Max nTPM: 50.3
Min nTPM: 37.1
RHH5308_R3675
37.1
RHH5216_R3588
38.5
RHH5245_R3617
50.3
RHH5274_R3646
44.5
Non-switched memory B-cell nTPM: 45.1
Samples: 4
Max nTPM: 57.2
Min nTPM: 34.6
RHH5309_R3676
34.6
RHH5217_R3589
40.1
RHH5246_R3618
48.4
RHH5275_R3647
57.2
Plasmablast nTPM: 24.1
Samples: 4
Max nTPM: 29.1
Min nTPM: 20.6
RHH5312_R3679
25.1
RHH5220_R3592
20.6
RHH5249_R3621
21.6
RHH5278_R3650
29.1
Switched memory B-cell nTPM: 38.6
Samples: 4
Max nTPM: 47.7
Min nTPM: 28.3
RHH5311_R3678
40.0
RHH5219_R3591
28.3
RHH5248_R3620
38.3
RHH5277_R3649
47.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.1
Schmiedel sample id
TPM
Naive B-cell TPM: 125.1
Samples: 91
Max TPM: 188.7
Min TPM: 87.8
B_CELL_NAIVE_1
188.7
B_CELL_NAIVE_2
179.4
B_CELL_NAIVE_3
173.5
B_CELL_NAIVE_4
170.2
B_CELL_NAIVE_5
170.1
B_CELL_NAIVE_6
162.4
B_CELL_NAIVE_7
154.8
B_CELL_NAIVE_8
147.1
B_CELL_NAIVE_9
146.8
B_CELL_NAIVE_10
146.1
B_CELL_NAIVE_11
145.6
B_CELL_NAIVE_12
145.6
B_CELL_NAIVE_13
142.4
B_CELL_NAIVE_14
141.7
B_CELL_NAIVE_15
140.8
B_CELL_NAIVE_16
138.7
B_CELL_NAIVE_17
137.3
B_CELL_NAIVE_18
135.7
B_CELL_NAIVE_19
135.6
B_CELL_NAIVE_20
134.4
B_CELL_NAIVE_21
134.4
B_CELL_NAIVE_22
133.9
B_CELL_NAIVE_23
132.6
B_CELL_NAIVE_24
132.6
B_CELL_NAIVE_25
132.1
B_CELL_NAIVE_26
131.2
B_CELL_NAIVE_27
131.0
B_CELL_NAIVE_28
130.6
B_CELL_NAIVE_29
130.4
B_CELL_NAIVE_30
130.0
B_CELL_NAIVE_31
129.8
B_CELL_NAIVE_32
128.0
B_CELL_NAIVE_33
127.3
B_CELL_NAIVE_34
126.4
B_CELL_NAIVE_35
126.3
B_CELL_NAIVE_36
125.9
B_CELL_NAIVE_37
125.7
B_CELL_NAIVE_38
125.2
B_CELL_NAIVE_39
125.0
B_CELL_NAIVE_40
124.7
B_CELL_NAIVE_41
124.6
B_CELL_NAIVE_42
124.6
B_CELL_NAIVE_43
123.8
B_CELL_NAIVE_44
123.4
B_CELL_NAIVE_45
123.4
B_CELL_NAIVE_46
122.6
B_CELL_NAIVE_47
122.0
B_CELL_NAIVE_48
121.1
B_CELL_NAIVE_49
120.3
B_CELL_NAIVE_50
119.8
B_CELL_NAIVE_51
119.2
B_CELL_NAIVE_52
118.6
B_CELL_NAIVE_53
118.4
B_CELL_NAIVE_54
118.0
B_CELL_NAIVE_55
117.7
B_CELL_NAIVE_56
117.6
B_CELL_NAIVE_57
117.4
B_CELL_NAIVE_58
117.4
B_CELL_NAIVE_59
117.1
B_CELL_NAIVE_60
115.9
B_CELL_NAIVE_61
115.7
B_CELL_NAIVE_62
115.7
B_CELL_NAIVE_63
115.5
B_CELL_NAIVE_64
115.5
B_CELL_NAIVE_65
115.4
B_CELL_NAIVE_66
115.3
B_CELL_NAIVE_67
115.2
B_CELL_NAIVE_68
114.8
B_CELL_NAIVE_69
114.5
B_CELL_NAIVE_70
114.3
B_CELL_NAIVE_71
114.3
B_CELL_NAIVE_72
113.1
B_CELL_NAIVE_73
112.2
B_CELL_NAIVE_74
112.2
B_CELL_NAIVE_75
111.2
B_CELL_NAIVE_76
111.2
B_CELL_NAIVE_77
111.1
B_CELL_NAIVE_78
109.7
B_CELL_NAIVE_79
109.1
B_CELL_NAIVE_80
106.1
B_CELL_NAIVE_81
106.0
B_CELL_NAIVE_82
103.5
B_CELL_NAIVE_83
103.4
B_CELL_NAIVE_84
103.1
B_CELL_NAIVE_85
103.0
B_CELL_NAIVE_86
102.5
B_CELL_NAIVE_87
102.0
B_CELL_NAIVE_88
100.0
B_CELL_NAIVE_89
92.8
B_CELL_NAIVE_90
92.7
B_CELL_NAIVE_91
87.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
