A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.9
nTPM
Monaco:
40.8
nTPM
Schmiedel:
104.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.9
HPA sample
nTPM
Classical monocyte nTPM: 2.9
Samples: 6
Max nTPM: 4.7
Min nTPM: 2.0
P10809_1003
4.7
P10809_1020
2.9
P10809_1039
2.0
P10809_1058
2.6
P10809_1080
2.6
P10809_1107
2.6
Intermediate monocyte nTPM: 2.7
Samples: 6
Max nTPM: 4.1
Min nTPM: 1.4
P10809_1004
3.7
P10809_1023
1.4
P10809_1042
4.1
P10809_1061
2.4
P10809_1081
2.3
P10809_1108
2.3
Non-classical monocyte nTPM: 2.8
Samples: 5
Max nTPM: 4.5
Min nTPM: 0.0
P10809_1005
4.2
P10809_1053
4.5
P10809_1072
0.0
P10809_1082
2.9
P10809_1109
2.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.8
Monaco sample
nTPM
Classical monocyte nTPM: 35.8
Samples: 4
Max nTPM: 45.3
Min nTPM: 23.6
RHH5313_R3680
32.1
RHH5221_R3593
23.6
RHH5250_R3622
42.4
RHH5279_R3651
45.3
Intermediate monocyte nTPM: 40.3
Samples: 4
Max nTPM: 51.8
Min nTPM: 30.4
RHH5314_R3681
30.4
RHH5222_R3594
51.8
RHH5251_R3623
38.8
RHH5280_R3652
40.1
Non-classical monocyte nTPM: 40.8
Samples: 4
Max nTPM: 48.0
Min nTPM: 34.2
RHH5315_R3682
48.0
RHH5223_R3595
41.9
RHH5252_R3624
34.2
RHH5281_R3653
39.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.1
Schmiedel sample id
TPM
Classical monocyte TPM: 50.3
Samples: 91
Max TPM: 65.7
Min TPM: 33.8
MONOCYTES_1
65.7
MONOCYTES_2
65.0
MONOCYTES_3
64.0
MONOCYTES_4
63.1
MONOCYTES_5
62.6
MONOCYTES_6
62.3
MONOCYTES_7
61.4
MONOCYTES_8
60.9
MONOCYTES_9
60.7
MONOCYTES_10
60.2
MONOCYTES_11
59.7
MONOCYTES_12
59.7
MONOCYTES_13
59.3
MONOCYTES_14
58.7
MONOCYTES_15
58.5
MONOCYTES_16
58.4
MONOCYTES_17
57.6
MONOCYTES_18
57.3
MONOCYTES_19
56.4
MONOCYTES_20
56.0
MONOCYTES_21
55.8
MONOCYTES_22
55.4
MONOCYTES_23
55.1
MONOCYTES_24
55.0
MONOCYTES_25
54.8
MONOCYTES_26
54.7
MONOCYTES_27
54.5
MONOCYTES_28
54.5
MONOCYTES_29
54.4
MONOCYTES_30
54.3
MONOCYTES_31
54.3
MONOCYTES_32
54.2
MONOCYTES_33
54.0
MONOCYTES_34
53.9
MONOCYTES_35
53.2
MONOCYTES_36
53.0
MONOCYTES_37
52.9
MONOCYTES_38
52.3
MONOCYTES_39
52.1
MONOCYTES_40
52.0
MONOCYTES_41
51.4
MONOCYTES_42
51.0
MONOCYTES_43
50.8
MONOCYTES_44
50.6
MONOCYTES_45
50.5
MONOCYTES_46
50.4
MONOCYTES_47
49.3
MONOCYTES_48
49.1
MONOCYTES_49
48.8
MONOCYTES_50
48.7
MONOCYTES_51
48.7
MONOCYTES_52
48.1
MONOCYTES_53
48.1
MONOCYTES_54
48.0
MONOCYTES_55
47.8
MONOCYTES_56
47.3
MONOCYTES_57
47.3
MONOCYTES_58
47.3
MONOCYTES_59
46.8
MONOCYTES_60
46.8
MONOCYTES_61
46.6
MONOCYTES_62
46.3
MONOCYTES_63
45.7
MONOCYTES_64
45.5
MONOCYTES_65
44.8
MONOCYTES_66
44.5
MONOCYTES_67
44.2
MONOCYTES_68
44.0
MONOCYTES_69
44.0
MONOCYTES_70
43.9
MONOCYTES_71
43.8
MONOCYTES_72
43.8
MONOCYTES_73
43.7
MONOCYTES_74
43.7
MONOCYTES_75
43.6
MONOCYTES_76
43.5
MONOCYTES_77
43.5
MONOCYTES_78
42.7
MONOCYTES_79
42.5
MONOCYTES_80
42.0
MONOCYTES_81
41.6
MONOCYTES_82
41.5
MONOCYTES_83
40.6
MONOCYTES_84
40.5
MONOCYTES_85
40.1
MONOCYTES_86
39.5
MONOCYTES_87
39.5
MONOCYTES_88
39.3
MONOCYTES_89
36.5
MONOCYTES_90
34.0
MONOCYTES_91
33.8
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Non-classical monocyte TPM: 104.1
Samples: 90
Max TPM: 143.5
Min TPM: 66.1
M2_1
143.5
M2_2
140.8
M2_3
140.4
M2_4
136.8
M2_5
132.5
M2_6
130.7
M2_7
129.8
M2_8
128.0
M2_9
127.6
M2_10
126.1
M2_11
125.1
M2_12
124.2
M2_13
124.0
M2_14
123.0
M2_15
120.6
M2_16
120.4
M2_17
120.4
M2_18
118.0
M2_19
115.7
M2_20
115.1
M2_21
113.4
M2_22
113.3
M2_23
111.6
M2_24
111.2
M2_25
109.8
M2_26
109.3
M2_27
109.2
M2_28
109.0
M2_29
107.8
M2_30
107.7
M2_31
107.7
M2_32
107.5
M2_33
107.5
M2_34
107.4
M2_35
107.0
M2_36
106.9
M2_37
106.1
M2_38
105.7
M2_39
105.0
M2_40
104.8
M2_41
104.6
M2_42
104.4
M2_43
103.5
M2_44
103.0
M2_45
102.3
M2_46
102.3
M2_47
102.2
M2_48
101.9
M2_49
101.5
M2_50
101.4
M2_51
100.7
M2_52
99.7
M2_53
98.8
M2_54
98.3
M2_55
97.8
M2_56
97.7
M2_57
97.5
M2_58
97.4
M2_59
97.0
M2_60
96.8
M2_61
95.9
M2_62
95.8
M2_63
95.8
M2_64
95.1
M2_65
94.8
M2_66
94.6
M2_67
94.6
M2_68
94.4
M2_69
93.1
M2_70
92.3
M2_71
91.5
M2_72
91.1
M2_73
90.8
M2_74
90.4
M2_75
90.2
M2_76
89.7
M2_77
88.8
M2_78
88.8
M2_79
88.6
M2_80
88.0
M2_81
87.6
M2_82
86.7
M2_83
85.3
M2_84
85.1
M2_85
80.8
M2_86
80.1
M2_87
80.0
M2_88
79.4
M2_89
77.5
M2_90
66.1
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