A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.9
nTPM
Monaco:
46.4
nTPM
Schmiedel:
102.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.9
HPA sample
nTPM
NK-cell nTPM: 5.9
Samples: 6
Max nTPM: 11.5
Min nTPM: 0.0
P10809_1013
8.9
P10809_1033
4.4
P10809_1052
3.4
P10809_1071
11.5
P10809_1093
0.0
P10809_1103
7.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.4
Monaco sample
nTPM
NK-cell nTPM: 46.4
Samples: 4
Max nTPM: 53.1
Min nTPM: 37.6
RHH5316_R3683
37.6
RHH5224_R3596
46.1
RHH5253_R3625
48.9
RHH5282_R3654
53.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.1
Schmiedel sample id
TPM
NK-cell TPM: 102.1
Samples: 90
Max TPM: 160.2
Min TPM: 67.1
NK_1
160.2
NK_2
147.3
NK_3
146.1
NK_4
139.7
NK_5
136.4
NK_6
135.8
NK_7
133.0
NK_8
132.1
NK_9
127.6
NK_10
127.6
NK_11
126.8
NK_12
126.1
NK_13
125.5
NK_14
123.7
NK_15
121.9
NK_16
120.2
NK_17
118.0
NK_18
117.1
NK_19
116.6
NK_20
116.5
NK_21
115.6
NK_22
115.1
NK_23
114.1
NK_24
113.6
NK_25
113.2
NK_26
113.2
NK_27
112.2
NK_28
112.1
NK_29
110.7
NK_30
108.5
NK_31
108.1
NK_32
106.9
NK_33
106.7
NK_34
105.8
NK_35
104.8
NK_36
104.4
NK_37
103.3
NK_38
102.6
NK_39
101.5
NK_40
101.4
NK_41
101.4
NK_42
100.2
NK_43
100.0
NK_44
100.0
NK_45
99.5
NK_46
99.3
NK_47
99.2
NK_48
99.0
NK_49
96.4
NK_50
96.1
NK_51
96.0
NK_52
95.9
NK_53
95.8
NK_54
95.5
NK_55
94.4
NK_56
94.0
NK_57
93.1
NK_58
92.2
NK_59
91.9
NK_60
91.8
NK_61
91.2
NK_62
91.0
NK_63
91.0
NK_64
90.7
NK_65
89.7
NK_66
89.7
NK_67
89.6
NK_68
88.9
NK_69
88.8
NK_70
88.5
NK_71
88.3
NK_72
87.4
NK_73
86.8
NK_74
86.2
NK_75
86.1
NK_76
85.2
NK_77
84.3
NK_78
84.1
NK_79
78.4
NK_80
78.2
NK_81
76.8
NK_82
76.4
NK_83
76.4
NK_84
76.2
NK_85
75.4
NK_86
74.5
NK_87
73.2
NK_88
72.2
NK_89
71.4
NK_90
67.1
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