RPS6
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • RPS6
EVOLUTIONARY SPINAL CORD Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1829.7 nTPM
HPA Brain:795.6 nTPM
GTEx:1829.7 nTPM
FANTOM5:293.2 Scaled Tags Per Million
Macaque:579.9 nTPM
Mouse:341.9 nTPM
Rat:0.0 nTPM
Pig:98.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - PROTEINTALKS DB MS
Median intensity 33639
Sample Intensity
Spinal cord_01
94166
Spinal cord_02
64711
Spinal cord_03
28280
Spinal cord_04
45153
Spinal cord_05
28595
Spinal cord_06
32611
Spinal cord_07
34666
Spinal cord_08
18808

SPINAL CORD - HPA Brain Stereo-seq

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

795.6
Sample id Sample description nTPM
Anterior funiculus (white matter)
nTPM: 703.5
2734 Male, age 80, both hemispheres 753.7
2818 Female, age 79, both hemispheres 701.8
2819 Male, age 47, both hemispheres 680.0
2193 Male, age 75, both hemispheres 678.3
Cervical spinal cord, central gray
nTPM: 636.8
2565 Male, age 75, midline 746.4
1981 Female, age 72, midline 715.5
2048 Male, age 55, midline 628.6
2816 Male, age 47, midline 558.8
2194 Female, age 79, both hemispheres 534.7
Cervical spinal cord, dorsal horn
nTPM: 587.0
2173 Female, age 72, unknown 826.9
2296 Male, age 66, both hemispheres 656.3
2069 Male, age 47, both hemispheres 636.6
1877 Male, age 55, unknown 593.8
2721 Male, age 90, both hemispheres 434.5
2297 Male, age 75, both hemispheres 373.7
Cervical spinal cord, ventral horn
nTPM: 795.6
2480 Male, age 75, both hemispheres 1064.4
2809 Male, age 90, both hemispheres 974.0
2098 Female, age 72, unknown 876.7
2295 Male, age 66, both hemispheres 779.5
2068 Male, age 55, unknown 602.3
2820 Female, age 79, both hemispheres 476.9
Dorsal funiculus (white matter)
nTPM: 680.1
2810 Male, age 90, both hemispheres 751.3
2817 Male, age 47, both hemispheres 705.7
2064 Female, age 79, both hemispheres 697.1
2812 Male, age 66, both hemispheres 636.6
2128 Male, age 75, both hemispheres 609.6
Lateral funiculus (white matter)
nTPM: 676.6
2094 Female, age 79, both hemispheres 795.7
2192 Male, age 75, both hemispheres 676.8
2099 Male, age 90, both hemispheres 624.3
2294 Male, age 66, both hemispheres 609.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1829.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1829.7
Samples: 204

Max nTPM: 4442.7
Min nTPM: 630.8
Std nTPM: 602.6
Median nTPM: 1698.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 4442.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3382.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3360.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 3350.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 3301.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3214.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3201.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 3167.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 3159.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3038.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3010.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2918.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2892.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2831.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 2812.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2781.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 2757.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 2741.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 2722.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 2713.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2693.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2690.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 2679.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2664.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2650.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 2648.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 2607.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 2603.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 2552.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2513.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2501.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2485.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2441.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2436.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2428.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2397.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2358.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2315.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2310.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2306.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 2305.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2300.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 2277.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2247.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2242.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2236.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2223.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2216.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 2175.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2169.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2133.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2099.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2090.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 2072.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2071.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2054.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2050.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 2049.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 2030.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2020.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2017.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2012.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2010.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2010.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1997.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1986.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1977.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1971.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1970.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1965.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1962.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1957.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1954.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1947.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1920.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1899.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1894.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1886.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1886.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1879.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1872.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1863.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1859.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1852.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1844.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1833.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1819.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1812.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1770.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1768.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1753.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1749.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1749.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1748.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1740.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1737.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1732.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1713.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1711.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1707.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1706.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1700.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1696.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1688.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1679.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1675.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1672.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1668.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1658.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1657.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1656.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1655.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1651.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1642.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1639.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1633.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1632.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1631.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1630.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1626.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1619.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1614.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1612.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1605.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1599.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1590.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1589.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1588.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1574.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1573.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1542.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1536.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1536.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1535.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1530.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1527.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1522.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1486.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1483.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1476.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1472.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1469.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1462.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1458.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1448.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1441.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1433.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1426.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1412.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1409.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1407.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1402.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1396.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1392.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1379.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1378.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1377.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1374.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1372.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1359.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1355.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1349.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 1346.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1346.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1331.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1324.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1319.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1309.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1302.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1294.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1289.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1277.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1267.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1255.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1245.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1242.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1239.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1239.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1236.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1222.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1205.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1202.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1185.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 1184.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1168.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1138.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1133.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1115.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1113.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1106.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 1104.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1054.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1038.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1026.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1016.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1016.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 974.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 974.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 963.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 957.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 951.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 899.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 772.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 630.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

293.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 293.2
FF:10181-103D1 60 years, female 390.6
FF:10159-103A6 76 years, female 195.8

SPINAL CORD - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

579.9
Macaque sample Sample description nTPM
Dorsal spinal cord
nTPM: 502.2
Samples: 2

Max nTPM: 528.8
Min nTPM: 475.6
Sample A 475.6
Sample B 528.8
Ventral spinal cord
nTPM: 579.9
Samples: 1

Max nTPM: 579.9
Min nTPM: 579.9
Sample A 579.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 98.5
Samples: 4

Max nTPM: 138.9
Min nTPM: 68.9
Sample A Female 68.9
Sample B Female 110.9
Sample C Male 138.9
Sample D Male 75.4
Ventral spinal cord
nTPM: 85.9
Samples: 4

Max nTPM: 95.9
Min nTPM: 65.7
Sample A Female 65.7
Sample B Female 91.4
Sample C Male 95.9
Sample D Male 90.7

SPINAL CORD - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.9
Mouse sample Sample description nTPM
Spinal cord
nTPM: 341.9
Samples: 4

Max nTPM: 352.0
Min nTPM: 329.8
Sample A 352.0
Sample B 329.8
Sample C 336.1
Sample D 349.5

SPINAL CORD - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Rat sample Sample description nTPM
Ventral spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.