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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • CELL LINE

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  • EVOLUTION

  • RPS6
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:611.8 nTPM
GTEx:1575.5 nTPM
FANTOM5:226.8 Scaled Tags Per Million
Macaque:451.9 nTPM
Pig:79.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

611.8
Sample id Sample description nTPM
Substantia nigra
nTPM: 611.8
2699 Male, age 18, unknown 792.8
2665 Male, age 74, both hemispheres 726.5
1851 Male, age 51, unknown 671.9
2241 Male, age 72, unknown 605.0
2409 Female, age 72, unknown 596.1
2590 Female, age 75, unknown 583.8
1916 Female, age 42, unknown 581.1
1889 Female, age 72, unknown 523.9
2583 Male, age 75, right hemisphere 520.1
1941 Male, age 53, unknown 516.5

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1575.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1575.5
Samples: 183

Max nTPM: 4611.9
Min nTPM: 475.8
Std nTPM: 599.9
Median nTPM: 1495.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4611.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3512.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 3352.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3235.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2841.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2766.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2666.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2632.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2617.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 2583.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 2566.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2564.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2507.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2472.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2471.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2445.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2411.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2377.6
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 2365.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2363.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2354.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2322.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2321.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2317.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2259.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2241.0
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 2154.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2126.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 2108.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 2103.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 2099.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2093.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 2077.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 2028.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 2027.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 2020.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 2013.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1985.1
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 1961.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1955.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1951.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 1949.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1945.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1939.2
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1913.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1891.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1886.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1863.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1861.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1854.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1850.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1848.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1841.9
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1829.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1822.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1820.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1804.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1800.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1782.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1781.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1758.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1750.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1729.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1727.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1687.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1678.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1677.1
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1676.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1673.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1666.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1663.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1629.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1609.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1609.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1608.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1588.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 1585.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1577.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1576.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1553.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1549.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1544.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1539.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1535.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1533.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1528.0
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1527.2
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1523.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 1518.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1510.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1500.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1495.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 1491.8
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 1469.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1465.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1456.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 1451.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 1450.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1439.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1439.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1435.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 1424.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1414.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1407.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 1405.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1397.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1371.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 1349.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1349.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 1338.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 1326.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 1324.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1322.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 1314.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 1304.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1296.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 1287.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1267.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1258.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 1207.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 1203.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1196.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 1194.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 1184.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 1179.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 1175.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1173.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 1172.9
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 1161.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1158.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 1157.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 1156.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 1140.3
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 1138.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 1133.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1129.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 1127.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 1122.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 1117.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 1117.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 1100.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 1089.4
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 1082.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1081.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1077.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 1076.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1064.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1058.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 1045.2
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 1044.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1037.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 1027.4
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 1021.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1018.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 1012.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1009.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1007.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 1006.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 990.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 986.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 975.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 972.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 965.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 965.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 965.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 948.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 935.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 924.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 922.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 911.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 903.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 902.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 891.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 882.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 876.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 871.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 849.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 742.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 727.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 706.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 542.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 498.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 475.8
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

226.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 226.8
FF:10158-103A5 76 years, female 226.8

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

451.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 451.9
Samples: 1

Max nTPM: 451.9
Min nTPM: 451.9
Sample A 451.9

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.9
Samples: 3

Max nTPM: 89.2
Min nTPM: 66.7
Sample A Female 89.2
Sample B Female 83.9
Sample C Male 66.7

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