A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7133.6
nTPM
Monaco:
2154.3
nTPM
Schmiedel:
3148.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7133.6
HPA sample
nTPM
Memory B-cell nTPM: 7133.6
Samples: 6
Max nTPM: 10054.0
Min nTPM: 4593.8
P10809_1017
4593.8
P10809_1025
7050.3
P10809_1044
10054.0
P10809_1063
7175.8
P10809_1092
7464.5
P10809_1105
6463.2
Naive B-cell nTPM: 6065.4
Samples: 6
Max nTPM: 10844.6
Min nTPM: 3393.8
P10809_1011
3393.8
P10809_1029
5251.7
P10809_1048
10844.6
P10809_1067
5660.9
P10809_1091
5710.8
P10809_1104
5530.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2154.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 2154.3
Samples: 4
Max nTPM: 3688.9
Min nTPM: 1140.5
RHH5310_R3677
2324.8
RHH5218_R3590
1140.5
RHH5247_R3619
3688.9
RHH5276_R3648
1463.0
Naive B-cell nTPM: 1871.4
Samples: 4
Max nTPM: 2494.1
Min nTPM: 1502.5
RHH5308_R3675
2494.1
RHH5216_R3588
1591.3
RHH5245_R3617
1897.8
RHH5274_R3646
1502.5
Non-switched memory B-cell nTPM: 1978.2
Samples: 4
Max nTPM: 2511.4
Min nTPM: 1577.4
RHH5309_R3676
2511.4
RHH5217_R3589
1577.4
RHH5246_R3618
2200.8
RHH5275_R3647
1623.1
Plasmablast nTPM: 1333.5
Samples: 4
Max nTPM: 1553.9
Min nTPM: 1112.5
RHH5312_R3679
1396.5
RHH5220_R3592
1112.5
RHH5249_R3621
1553.9
RHH5278_R3650
1271.0
Switched memory B-cell nTPM: 2071.8
Samples: 4
Max nTPM: 3241.8
Min nTPM: 1428.4
RHH5311_R3678
3241.8
RHH5219_R3591
2123.0
RHH5248_R3620
1494.0
RHH5277_R3649
1428.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3148.5
Schmiedel sample id
TPM
Naive B-cell TPM: 3148.5
Samples: 91
Max TPM: 3839.4
Min TPM: 2479.6
B_CELL_NAIVE_1
3839.4
B_CELL_NAIVE_2
3761.9
B_CELL_NAIVE_3
3760.0
B_CELL_NAIVE_4
3759.9
B_CELL_NAIVE_5
3656.3
B_CELL_NAIVE_6
3601.9
B_CELL_NAIVE_7
3579.1
B_CELL_NAIVE_8
3566.6
B_CELL_NAIVE_9
3545.3
B_CELL_NAIVE_10
3535.8
B_CELL_NAIVE_11
3529.6
B_CELL_NAIVE_12
3502.1
B_CELL_NAIVE_13
3501.6
B_CELL_NAIVE_14
3479.5
B_CELL_NAIVE_15
3477.5
B_CELL_NAIVE_16
3465.0
B_CELL_NAIVE_17
3455.7
B_CELL_NAIVE_18
3455.5
B_CELL_NAIVE_19
3454.7
B_CELL_NAIVE_20
3413.9
B_CELL_NAIVE_21
3406.5
B_CELL_NAIVE_22
3390.3
B_CELL_NAIVE_23
3365.1
B_CELL_NAIVE_24
3355.7
B_CELL_NAIVE_25
3338.3
B_CELL_NAIVE_26
3329.4
B_CELL_NAIVE_27
3323.7
B_CELL_NAIVE_28
3319.4
B_CELL_NAIVE_29
3315.7
B_CELL_NAIVE_30
3286.4
B_CELL_NAIVE_31
3283.1
B_CELL_NAIVE_32
3275.4
B_CELL_NAIVE_33
3244.6
B_CELL_NAIVE_34
3243.5
B_CELL_NAIVE_35
3236.5
B_CELL_NAIVE_36
3227.1
B_CELL_NAIVE_37
3225.7
B_CELL_NAIVE_38
3219.0
B_CELL_NAIVE_39
3199.7
B_CELL_NAIVE_40
3188.7
B_CELL_NAIVE_41
3185.8
B_CELL_NAIVE_42
3181.9
B_CELL_NAIVE_43
3173.3
B_CELL_NAIVE_44
3167.3
B_CELL_NAIVE_45
3146.8
B_CELL_NAIVE_46
3128.7
B_CELL_NAIVE_47
3122.8
B_CELL_NAIVE_48
3122.7
B_CELL_NAIVE_49
3120.2
B_CELL_NAIVE_50
3118.2
B_CELL_NAIVE_51
3116.2
B_CELL_NAIVE_52
3113.4
B_CELL_NAIVE_53
3110.4
B_CELL_NAIVE_54
3107.3
B_CELL_NAIVE_55
3085.7
B_CELL_NAIVE_56
3068.2
B_CELL_NAIVE_57
3066.9
B_CELL_NAIVE_58
3041.8
B_CELL_NAIVE_59
3029.4
B_CELL_NAIVE_60
3011.9
B_CELL_NAIVE_61
2997.3
B_CELL_NAIVE_62
2989.0
B_CELL_NAIVE_63
2972.3
B_CELL_NAIVE_64
2969.2
B_CELL_NAIVE_65
2964.7
B_CELL_NAIVE_66
2949.0
B_CELL_NAIVE_67
2937.0
B_CELL_NAIVE_68
2928.1
B_CELL_NAIVE_69
2924.5
B_CELL_NAIVE_70
2922.4
B_CELL_NAIVE_71
2916.2
B_CELL_NAIVE_72
2902.1
B_CELL_NAIVE_73
2881.2
B_CELL_NAIVE_74
2874.1
B_CELL_NAIVE_75
2835.1
B_CELL_NAIVE_76
2814.1
B_CELL_NAIVE_77
2810.8
B_CELL_NAIVE_78
2798.2
B_CELL_NAIVE_79
2788.0
B_CELL_NAIVE_80
2787.1
B_CELL_NAIVE_81
2785.6
B_CELL_NAIVE_82
2750.6
B_CELL_NAIVE_83
2726.2
B_CELL_NAIVE_84
2713.7
B_CELL_NAIVE_85
2707.4
B_CELL_NAIVE_86
2667.6
B_CELL_NAIVE_87
2654.1
B_CELL_NAIVE_88
2595.7
B_CELL_NAIVE_89
2584.1
B_CELL_NAIVE_90
2558.7
B_CELL_NAIVE_91
2479.6
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