A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2379.7
nTPM
Monaco:
863.8
nTPM
Schmiedel:
1370.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2379.7
HPA sample
nTPM
Classical monocyte nTPM: 2379.7
Samples: 6
Max nTPM: 4008.4
Min nTPM: 1544.1
P10809_1003
4008.4
P10809_1020
1868.0
P10809_1039
2571.8
P10809_1058
1946.2
P10809_1080
1544.1
P10809_1107
2339.7
Intermediate monocyte nTPM: 2087.7
Samples: 6
Max nTPM: 2943.8
Min nTPM: 1605.3
P10809_1004
1684.2
P10809_1023
2467.9
P10809_1042
2217.3
P10809_1061
1605.3
P10809_1081
1607.9
P10809_1108
2943.8
Non-classical monocyte nTPM: 1956.2
Samples: 5
Max nTPM: 2461.6
Min nTPM: 1692.8
P10809_1005
1864.4
P10809_1053
1889.4
P10809_1072
1872.6
P10809_1082
1692.8
P10809_1109
2461.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
863.8
Monaco sample
nTPM
Classical monocyte nTPM: 711.4
Samples: 4
Max nTPM: 879.6
Min nTPM: 479.1
RHH5313_R3680
674.0
RHH5221_R3593
479.1
RHH5250_R3622
879.6
RHH5279_R3651
812.8
Intermediate monocyte nTPM: 863.8
Samples: 4
Max nTPM: 1021.8
Min nTPM: 692.5
RHH5314_R3681
1021.8
RHH5222_R3594
692.5
RHH5251_R3623
810.8
RHH5280_R3652
929.9
Non-classical monocyte nTPM: 659.2
Samples: 4
Max nTPM: 778.7
Min nTPM: 525.0
RHH5315_R3682
778.7
RHH5223_R3595
525.0
RHH5252_R3624
622.1
RHH5281_R3653
711.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1370.0
Schmiedel sample id
TPM
Classical monocyte TPM: 1314.4
Samples: 91
Max TPM: 1707.5
Min TPM: 975.5
MONOCYTES_1
1707.5
MONOCYTES_2
1705.7
MONOCYTES_3
1665.1
MONOCYTES_4
1597.8
MONOCYTES_5
1548.8
MONOCYTES_6
1528.4
MONOCYTES_7
1500.2
MONOCYTES_8
1491.5
MONOCYTES_9
1490.0
MONOCYTES_10
1484.0
MONOCYTES_11
1458.4
MONOCYTES_12
1457.3
MONOCYTES_13
1452.3
MONOCYTES_14
1434.1
MONOCYTES_15
1431.0
MONOCYTES_16
1427.2
MONOCYTES_17
1424.6
MONOCYTES_18
1423.9
MONOCYTES_19
1418.1
MONOCYTES_20
1414.4
MONOCYTES_21
1409.7
MONOCYTES_22
1405.7
MONOCYTES_23
1404.4
MONOCYTES_24
1399.0
MONOCYTES_25
1388.0
MONOCYTES_26
1377.8
MONOCYTES_27
1375.3
MONOCYTES_28
1367.8
MONOCYTES_29
1363.6
MONOCYTES_30
1361.0
MONOCYTES_31
1359.8
MONOCYTES_32
1356.1
MONOCYTES_33
1352.6
MONOCYTES_34
1347.8
MONOCYTES_35
1344.2
MONOCYTES_36
1342.0
MONOCYTES_37
1338.1
MONOCYTES_38
1334.9
MONOCYTES_39
1332.2
MONOCYTES_40
1331.6
MONOCYTES_41
1328.7
MONOCYTES_42
1327.3
MONOCYTES_43
1319.8
MONOCYTES_44
1311.8
MONOCYTES_45
1308.8
MONOCYTES_46
1307.8
MONOCYTES_47
1307.7
MONOCYTES_48
1307.5
MONOCYTES_49
1306.7
MONOCYTES_50
1301.3
MONOCYTES_51
1299.7
MONOCYTES_52
1298.4
MONOCYTES_53
1293.1
MONOCYTES_54
1290.7
MONOCYTES_55
1290.7
MONOCYTES_56
1284.2
MONOCYTES_57
1280.9
MONOCYTES_58
1276.8
MONOCYTES_59
1276.2
MONOCYTES_60
1275.9
MONOCYTES_61
1252.4
MONOCYTES_62
1252.1
MONOCYTES_63
1249.3
MONOCYTES_64
1249.2
MONOCYTES_65
1247.9
MONOCYTES_66
1232.6
MONOCYTES_67
1229.9
MONOCYTES_68
1229.1
MONOCYTES_69
1229.0
MONOCYTES_70
1228.6
MONOCYTES_71
1226.7
MONOCYTES_72
1220.7
MONOCYTES_73
1203.8
MONOCYTES_74
1203.5
MONOCYTES_75
1192.4
MONOCYTES_76
1186.1
MONOCYTES_77
1181.0
MONOCYTES_78
1169.5
MONOCYTES_79
1167.2
MONOCYTES_80
1157.5
MONOCYTES_81
1155.7
MONOCYTES_82
1146.7
MONOCYTES_83
1143.9
MONOCYTES_84
1137.9
MONOCYTES_85
1109.0
MONOCYTES_86
1091.6
MONOCYTES_87
1089.6
MONOCYTES_88
1078.9
MONOCYTES_89
1015.9
MONOCYTES_90
1010.2
MONOCYTES_91
975.5
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Non-classical monocyte TPM: 1370.0
Samples: 90
Max TPM: 1820.7
Min TPM: 998.1
M2_1
1820.7
M2_2
1771.9
M2_3
1650.9
M2_4
1644.2
M2_5
1593.4
M2_6
1565.7
M2_7
1559.4
M2_8
1548.3
M2_9
1546.7
M2_10
1520.1
M2_11
1517.9
M2_12
1498.5
M2_13
1495.9
M2_14
1495.7
M2_15
1490.6
M2_16
1490.3
M2_17
1484.7
M2_18
1484.0
M2_19
1481.6
M2_20
1477.7
M2_21
1473.6
M2_22
1472.5
M2_23
1456.4
M2_24
1453.1
M2_25
1433.7
M2_26
1428.7
M2_27
1416.5
M2_28
1415.6
M2_29
1412.8
M2_30
1410.6
M2_31
1410.2
M2_32
1407.6
M2_33
1405.9
M2_34
1399.2
M2_35
1394.9
M2_36
1379.8
M2_37
1379.8
M2_38
1379.3
M2_39
1378.9
M2_40
1377.0
M2_41
1376.5
M2_42
1370.9
M2_43
1367.3
M2_44
1364.9
M2_45
1356.4
M2_46
1356.2
M2_47
1349.1
M2_48
1348.0
M2_49
1347.3
M2_50
1343.8
M2_51
1332.6
M2_52
1331.3
M2_53
1330.1
M2_54
1327.0
M2_55
1326.8
M2_56
1325.9
M2_57
1324.1
M2_58
1322.5
M2_59
1316.1
M2_60
1314.6
M2_61
1305.7
M2_62
1304.6
M2_63
1300.7
M2_64
1291.5
M2_65
1287.9
M2_66
1285.7
M2_67
1283.3
M2_68
1275.2
M2_69
1275.1
M2_70
1275.1
M2_71
1269.3
M2_72
1263.1
M2_73
1261.0
M2_74
1245.4
M2_75
1244.9
M2_76
1242.8
M2_77
1242.1
M2_78
1232.4
M2_79
1228.6
M2_80
1226.7
M2_81
1219.6
M2_82
1216.6
M2_83
1211.3
M2_84
1189.5
M2_85
1187.8
M2_86
1185.4
M2_87
1175.9
M2_88
1159.5
M2_89
1157.5
M2_90
998.1
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