A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4164.2
nTPM
Monaco:
712.4
nTPM
Schmiedel:
1647.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4164.2
HPA sample
nTPM
NK-cell nTPM: 4164.2
Samples: 6
Max nTPM: 5452.9
Min nTPM: 3088.6
P10809_1013
3113.1
P10809_1033
4534.5
P10809_1052
4264.4
P10809_1071
5452.9
P10809_1093
3088.6
P10809_1103
4531.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
712.4
Monaco sample
nTPM
NK-cell nTPM: 712.4
Samples: 4
Max nTPM: 795.6
Min nTPM: 623.1
RHH5316_R3683
795.6
RHH5224_R3596
675.3
RHH5253_R3625
623.1
RHH5282_R3654
755.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1647.8
Schmiedel sample id
TPM
NK-cell TPM: 1647.8
Samples: 90
Max TPM: 2280.1
Min TPM: 1209.8
NK_1
2280.1
NK_2
2258.1
NK_3
2149.4
NK_4
2060.6
NK_5
1987.6
NK_6
1973.3
NK_7
1965.3
NK_8
1949.0
NK_9
1941.5
NK_10
1907.0
NK_11
1901.7
NK_12
1899.2
NK_13
1895.0
NK_14
1888.3
NK_15
1882.1
NK_16
1854.5
NK_17
1845.1
NK_18
1844.4
NK_19
1786.4
NK_20
1785.9
NK_21
1775.8
NK_22
1775.3
NK_23
1763.2
NK_24
1755.4
NK_25
1746.5
NK_26
1737.7
NK_27
1736.1
NK_28
1732.5
NK_29
1722.3
NK_30
1709.0
NK_31
1707.9
NK_32
1701.7
NK_33
1695.7
NK_34
1695.3
NK_35
1692.6
NK_36
1685.8
NK_37
1682.0
NK_38
1678.4
NK_39
1674.6
NK_40
1656.5
NK_41
1653.3
NK_42
1651.5
NK_43
1635.3
NK_44
1634.4
NK_45
1632.6
NK_46
1631.7
NK_47
1630.7
NK_48
1613.5
NK_49
1601.8
NK_50
1601.2
NK_51
1599.4
NK_52
1592.9
NK_53
1590.1
NK_54
1584.4
NK_55
1579.6
NK_56
1578.7
NK_57
1577.1
NK_58
1562.1
NK_59
1561.0
NK_60
1556.4
NK_61
1551.9
NK_62
1547.8
NK_63
1536.3
NK_64
1514.4
NK_65
1512.2
NK_66
1508.4
NK_67
1506.4
NK_68
1502.3
NK_69
1499.3
NK_70
1495.6
NK_71
1489.3
NK_72
1476.1
NK_73
1472.3
NK_74
1470.3
NK_75
1459.7
NK_76
1458.0
NK_77
1452.1
NK_78
1445.9
NK_79
1445.1
NK_80
1415.8
NK_81
1383.3
NK_82
1355.7
NK_83
1342.4
NK_84
1339.2
NK_85
1336.2
NK_86
1314.0
NK_87
1287.0
NK_88
1277.2
NK_89
1252.3
NK_90
1209.8
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