MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:110.0 nTPM
HPA Brain:362.3 nTPM
GTEx:110.0 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:136.9 nTPM
Mouse:113.3 nTPM
Allen mouse:6.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 362.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 140.5
2411 Female, age 72, unknown 178.5
1827 Male, age 72, unknown 176.5
2219 Male, age 76, both hemispheres 165.9
1870 Female, age 42, unknown 152.9
1833 Male, age 53, unknown 150.7
2666 Male, age 74, left hemisphere 148.7
2586 Male, age 75, left hemisphere 147.1
2828 Female, age 72, unknown 140.8
1830 Male, age 51, unknown 127.3
2019 Male, age 18, unknown 17.3
Dorsal raphe nucleus
nTPM: 217.2
2298 Female, age 72, unknown 316.6
2047 Male, age 72, unknown 232.0
2750 Male, age 76, both hemispheres 201.0
1828 Male, age 53, unknown 169.6
2016 Female, age 72, unknown 166.7
Inferior colliculus
nTPM: 136.9
2849 Male, age 72, unknown 178.8
2097 Female, age 72, unknown 145.1
1848 Female, age 42, unknown 119.4
1890 Male, age 53, unknown 104.3
Median raphe nucleus
nTPM: 362.3
2220 Male, age 76, midline 362.3
Periaquaductal grey, anterior
nTPM: 285.0
2502 Female, age 75, unknown 299.7
1795 Male, age 51, unknown 280.1
1947 Male, age 18, unknown 275.0
Periaquaductal grey, dorsal
nTPM: 256.2
1840 Male, age 53, unknown 338.6
2850 Male, age 76, both hemispheres 304.5
1831 Male, age 72, unknown 208.3
2464 Female, age 72, unknown 173.6
Periaquaductal grey, lateral
nTPM: 298.5
2053 Male, age 18, unknown 458.4
2140 Male, age 76, both hemispheres 262.5
2272 Male, age 74, both hemispheres 174.6
Pretectal area
nTPM: 232.2
2825 Male, age 18, unknown 454.1
2224 Female, age 72, unknown 288.7
2407 Male, age 75, both hemispheres 250.3
1816 Male, age 51, unknown 247.2
1815 Male, age 53, unknown 238.9
2667 Female, age 75, unknown 228.3
2273 Male, age 74, both hemispheres 211.8
1817 Female, age 42, unknown 166.9
1944 Female, age 72, unknown 164.1
2316 Male, age 76, right hemisphere 163.5
2007 Male, age 72, unknown 140.2
Red nucleus
nTPM: 45.3
2584 Male, age 75, left hemisphere 149.6
2725 Female, age 75, unknown 78.4
2588 Male, age 74, left hemisphere 68.4
2227 Male, age 72, unknown 38.7
2769 Male, age 72, unknown 38.3
2503 Female, age 72, unknown 34.9
1821 Female, age 72, unknown 27.3
1954 Female, age 42, unknown 22.6
2823 Male, age 76, right hemisphere 22.5
1904 Male, age 53, unknown 21.4
1865 Male, age 51, unknown 20.7
2785 Male, age 18, unknown 20.6
Substantia nigra
nTPM: 130.3
2699 Male, age 18, unknown 229.5
1889 Female, age 72, unknown 148.8
2665 Male, age 74, both hemispheres 142.8
1851 Male, age 51, unknown 131.6
2241 Male, age 72, unknown 129.3
1941 Male, age 53, unknown 115.4
2583 Male, age 75, right hemisphere 113.9
2590 Female, age 75, unknown 103.7
1916 Female, age 42, unknown 98.3
2409 Female, age 72, unknown 89.7
Superior colliculus
nTPM: 190.5
2261 Male, age 18, unknown 350.8
2664 Male, age 75, both hemispheres 275.1
1796 Male, age 53, unknown 234.4
1839 Male, age 51, unknown 205.8
2587 Male, age 74, left hemisphere 190.4
1913 Female, age 42, unknown 149.6
2087 Female, age 72, unknown 146.1
1995 Male, age 72, unknown 138.3
1895 Male, age 76, right hemisphere 122.2
2668 Female, age 75, unknown 92.5
Ventral tegmental area
nTPM: 178.6
1942 Male, age 51, unknown 219.0
2021 Male, age 53, unknown 212.2
2223 Female, age 72, unknown 186.1
2218 Male, age 76, both hemispheres 183.2
1915 Female, age 42, unknown 163.6
2410 Female, age 72, unknown 107.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 110.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 110.0
Samples: 183

Max nTPM: 589.9
Min nTPM: 16.5
Std nTPM: 58.8
Median nTPM: 98.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 589.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 290.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 253.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 253.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 228.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 228.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 227.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 223.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 212.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 195.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 188.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.0
FF:10158-103A5 76 years, female 83.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 136.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 136.9
Samples: 4

Max nTPM: 177.5
Min nTPM: 68.3
Sample A Female 153.0
Sample B Female 148.8
Sample C Male 177.5
Sample D Male 68.3
Midbrain
nTPM: 124.0
Samples: 4

Max nTPM: 155.9
Min nTPM: 97.1
Sample A Female 97.1
Sample B Female 112.1
Sample C Male 155.9
Sample D Male 130.7
Periaqueductal gray
nTPM: 126.5
Samples: 3

Max nTPM: 167.0
Min nTPM: 101.9
Sample B Female 101.9
Sample C Male 167.0
Sample D Male 110.5
Superior colliculi
nTPM: 83.9
Samples: 4

Max nTPM: 106.9
Min nTPM: 64.4
Sample A Female 106.9
Sample B Female 67.1
Sample C Male 64.4
Sample D Male 97.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 113.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.3
Samples: 4

Max nTPM: 121.9
Min nTPM: 103.1
Sample A Male 114.2
Sample B Male 114.1
Sample C Female 103.1
Sample D Female 121.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
69113656 Antisense, RP_050316_02_E05, Mouse strain C57BL/6J (56 days, male) 7.1
73592534 Antisense, RP_051017_01_E10, Mouse strain C57BL/6J (56 days, male) 4.8

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