A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.9
nTPM
Monaco:
29.8
nTPM
Schmiedel:
53.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.9
HPA sample
nTPM
Memory B-cell nTPM: 6.9
Samples: 6
Max nTPM: 23.4
Min nTPM: 2.7
P10809_1017
2.8
P10809_1025
4.3
P10809_1044
23.4
P10809_1063
2.7
P10809_1092
3.8
P10809_1105
4.5
Naive B-cell nTPM: 5.3
Samples: 6
Max nTPM: 13.2
Min nTPM: 3.4
P10809_1011
3.8
P10809_1029
4.1
P10809_1048
13.2
P10809_1067
4.0
P10809_1091
3.5
P10809_1104
3.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 18.0
Samples: 4
Max nTPM: 24.1
Min nTPM: 11.9
RHH5310_R3677
13.9
RHH5218_R3590
24.1
RHH5247_R3619
11.9
RHH5276_R3648
21.9
Naive B-cell nTPM: 17.2
Samples: 4
Max nTPM: 20.9
Min nTPM: 13.8
RHH5308_R3675
13.8
RHH5216_R3588
20.9
RHH5245_R3617
14.8
RHH5274_R3646
19.2
Non-switched memory B-cell nTPM: 14.6
Samples: 4
Max nTPM: 16.2
Min nTPM: 12.7
RHH5309_R3676
16.2
RHH5217_R3589
15.5
RHH5246_R3618
13.8
RHH5275_R3647
12.7
Plasmablast nTPM: 29.8
Samples: 4
Max nTPM: 55.8
Min nTPM: 16.4
RHH5312_R3679
24.0
RHH5220_R3592
22.9
RHH5249_R3621
55.8
RHH5278_R3650
16.4
Switched memory B-cell nTPM: 17.1
Samples: 4
Max nTPM: 22.6
Min nTPM: 11.1
RHH5311_R3678
19.9
RHH5219_R3591
11.1
RHH5248_R3620
14.9
RHH5277_R3649
22.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.9
Schmiedel sample id
TPM
Naive B-cell TPM: 53.9
Samples: 91
Max TPM: 69.4
Min TPM: 44.6
B_CELL_NAIVE_1
69.4
B_CELL_NAIVE_2
67.4
B_CELL_NAIVE_3
64.9
B_CELL_NAIVE_4
64.3
B_CELL_NAIVE_5
63.9
B_CELL_NAIVE_6
60.9
B_CELL_NAIVE_7
60.8
B_CELL_NAIVE_8
60.3
B_CELL_NAIVE_9
59.3
B_CELL_NAIVE_10
59.3
B_CELL_NAIVE_11
58.9
B_CELL_NAIVE_12
58.9
B_CELL_NAIVE_13
58.5
B_CELL_NAIVE_14
58.3
B_CELL_NAIVE_15
58.2
B_CELL_NAIVE_16
58.1
B_CELL_NAIVE_17
58.0
B_CELL_NAIVE_18
57.8
B_CELL_NAIVE_19
57.6
B_CELL_NAIVE_20
57.5
B_CELL_NAIVE_21
57.2
B_CELL_NAIVE_22
56.8
B_CELL_NAIVE_23
56.8
B_CELL_NAIVE_24
56.6
B_CELL_NAIVE_25
56.6
B_CELL_NAIVE_26
56.4
B_CELL_NAIVE_27
55.9
B_CELL_NAIVE_28
55.8
B_CELL_NAIVE_29
55.6
B_CELL_NAIVE_30
55.6
B_CELL_NAIVE_31
55.5
B_CELL_NAIVE_32
55.4
B_CELL_NAIVE_33
55.3
B_CELL_NAIVE_34
55.2
B_CELL_NAIVE_35
55.2
B_CELL_NAIVE_36
55.1
B_CELL_NAIVE_37
55.0
B_CELL_NAIVE_38
54.8
B_CELL_NAIVE_39
54.7
B_CELL_NAIVE_40
54.4
B_CELL_NAIVE_41
54.4
B_CELL_NAIVE_42
54.1
B_CELL_NAIVE_43
54.0
B_CELL_NAIVE_44
53.5
B_CELL_NAIVE_45
53.5
B_CELL_NAIVE_46
53.4
B_CELL_NAIVE_47
53.4
B_CELL_NAIVE_48
53.3
B_CELL_NAIVE_49
53.2
B_CELL_NAIVE_50
53.2
B_CELL_NAIVE_51
53.2
B_CELL_NAIVE_52
52.9
B_CELL_NAIVE_53
52.9
B_CELL_NAIVE_54
52.6
B_CELL_NAIVE_55
52.3
B_CELL_NAIVE_56
52.2
B_CELL_NAIVE_57
51.6
B_CELL_NAIVE_58
51.6
B_CELL_NAIVE_59
51.6
B_CELL_NAIVE_60
51.5
B_CELL_NAIVE_61
51.4
B_CELL_NAIVE_62
51.2
B_CELL_NAIVE_63
51.1
B_CELL_NAIVE_64
51.1
B_CELL_NAIVE_65
51.0
B_CELL_NAIVE_66
50.8
B_CELL_NAIVE_67
50.7
B_CELL_NAIVE_68
50.5
B_CELL_NAIVE_69
50.4
B_CELL_NAIVE_70
50.1
B_CELL_NAIVE_71
50.1
B_CELL_NAIVE_72
49.9
B_CELL_NAIVE_73
49.7
B_CELL_NAIVE_74
49.7
B_CELL_NAIVE_75
49.6
B_CELL_NAIVE_76
49.5
B_CELL_NAIVE_77
49.4
B_CELL_NAIVE_78
49.3
B_CELL_NAIVE_79
48.8
B_CELL_NAIVE_80
48.5
B_CELL_NAIVE_81
48.4
B_CELL_NAIVE_82
48.3
B_CELL_NAIVE_83
48.2
B_CELL_NAIVE_84
48.1
B_CELL_NAIVE_85
48.1
B_CELL_NAIVE_86
47.6
B_CELL_NAIVE_87
46.8
B_CELL_NAIVE_88
46.8
B_CELL_NAIVE_89
46.2
B_CELL_NAIVE_90
46.1
B_CELL_NAIVE_91
44.6
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The Human Protein Atlas project is funded
