A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.3
nTPM
Monaco:
14.6
nTPM
Schmiedel:
66.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.3
HPA sample
nTPM
NK-cell nTPM: 6.3
Samples: 6
Max nTPM: 23.2
Min nTPM: 2.3
P10809_1013
2.8
P10809_1033
2.6
P10809_1052
3.1
P10809_1071
3.6
P10809_1093
23.2
P10809_1103
2.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.6
Monaco sample
nTPM
NK-cell nTPM: 14.6
Samples: 4
Max nTPM: 16.4
Min nTPM: 13.0
RHH5316_R3683
14.4
RHH5224_R3596
16.4
RHH5253_R3625
13.0
RHH5282_R3654
14.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.2
Schmiedel sample id
TPM
NK-cell TPM: 66.2
Samples: 90
Max TPM: 82.6
Min TPM: 55.3
NK_1
82.6
NK_2
78.1
NK_3
77.2
NK_4
76.9
NK_5
76.3
NK_6
76.2
NK_7
74.5
NK_8
74.0
NK_9
73.8
NK_10
73.1
NK_11
73.1
NK_12
72.7
NK_13
72.4
NK_14
72.3
NK_15
72.3
NK_16
72.3
NK_17
71.9
NK_18
70.9
NK_19
70.2
NK_20
69.6
NK_21
69.1
NK_22
68.8
NK_23
68.7
NK_24
68.4
NK_25
68.2
NK_26
67.8
NK_27
67.8
NK_28
67.8
NK_29
67.7
NK_30
67.7
NK_31
67.7
NK_32
67.7
NK_33
67.7
NK_34
67.6
NK_35
67.6
NK_36
67.3
NK_37
67.3
NK_38
67.2
NK_39
67.1
NK_40
67.0
NK_41
66.9
NK_42
66.7
NK_43
66.5
NK_44
66.1
NK_45
65.9
NK_46
65.8
NK_47
65.5
NK_48
65.4
NK_49
65.1
NK_50
65.1
NK_51
65.0
NK_52
64.7
NK_53
64.7
NK_54
64.5
NK_55
64.5
NK_56
63.9
NK_57
63.9
NK_58
63.7
NK_59
63.5
NK_60
63.4
NK_61
63.2
NK_62
63.1
NK_63
63.1
NK_64
63.1
NK_65
63.0
NK_66
62.9
NK_67
62.8
NK_68
62.7
NK_69
62.5
NK_70
62.3
NK_71
62.2
NK_72
62.1
NK_73
61.9
NK_74
61.9
NK_75
61.8
NK_76
61.3
NK_77
60.6
NK_78
60.2
NK_79
59.9
NK_80
59.1
NK_81
59.0
NK_82
59.0
NK_83
58.9
NK_84
58.9
NK_85
58.3
NK_86
57.9
NK_87
57.8
NK_88
56.5
NK_89
56.2
NK_90
55.3
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