A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.1
nTPM
Monaco:
17.2
nTPM
Schmiedel:
46.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.1
HPA sample
nTPM
Classical monocyte nTPM: 3.1
Samples: 6
Max nTPM: 5.0
Min nTPM: 1.8
P10809_1003
1.8
P10809_1020
2.8
P10809_1039
5.0
P10809_1058
2.9
P10809_1080
2.2
P10809_1107
4.0
Intermediate monocyte nTPM: 2.1
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.6
P10809_1004
1.2
P10809_1023
2.0
P10809_1042
0.6
P10809_1061
3.1
P10809_1081
2.4
P10809_1108
3.2
Non-classical monocyte nTPM: 2.7
Samples: 5
Max nTPM: 3.9
Min nTPM: 1.9
P10809_1005
2.3
P10809_1053
1.9
P10809_1072
3.9
P10809_1082
3.0
P10809_1109
2.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.2
Monaco sample
nTPM
Classical monocyte nTPM: 12.1
Samples: 4
Max nTPM: 17.0
Min nTPM: 6.8
RHH5313_R3680
10.8
RHH5221_R3593
17.0
RHH5250_R3622
6.8
RHH5279_R3651
13.9
Intermediate monocyte nTPM: 17.2
Samples: 4
Max nTPM: 22.7
Min nTPM: 13.5
RHH5314_R3681
13.5
RHH5222_R3594
13.9
RHH5251_R3623
18.5
RHH5280_R3652
22.7
Non-classical monocyte nTPM: 11.7
Samples: 4
Max nTPM: 13.7
Min nTPM: 10.8
RHH5315_R3682
11.0
RHH5223_R3595
13.7
RHH5252_R3624
10.8
RHH5281_R3653
11.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.8
Schmiedel sample id
TPM
Classical monocyte TPM: 46.8
Samples: 91
Max TPM: 59.4
Min TPM: 35.0
MONOCYTES_1
59.4
MONOCYTES_2
57.3
MONOCYTES_3
57.1
MONOCYTES_4
57.0
MONOCYTES_5
55.7
MONOCYTES_6
55.6
MONOCYTES_7
54.9
MONOCYTES_8
54.1
MONOCYTES_9
53.5
MONOCYTES_10
52.9
MONOCYTES_11
52.8
MONOCYTES_12
52.7
MONOCYTES_13
52.5
MONOCYTES_14
51.9
MONOCYTES_15
51.7
MONOCYTES_16
51.6
MONOCYTES_17
50.8
MONOCYTES_18
50.6
MONOCYTES_19
50.2
MONOCYTES_20
50.2
MONOCYTES_21
50.1
MONOCYTES_22
50.0
MONOCYTES_23
50.0
MONOCYTES_24
49.8
MONOCYTES_25
49.8
MONOCYTES_26
49.8
MONOCYTES_27
49.4
MONOCYTES_28
49.3
MONOCYTES_29
49.2
MONOCYTES_30
49.2
MONOCYTES_31
49.2
MONOCYTES_32
48.5
MONOCYTES_33
48.5
MONOCYTES_34
48.3
MONOCYTES_35
47.9
MONOCYTES_36
47.8
MONOCYTES_37
47.8
MONOCYTES_38
47.5
MONOCYTES_39
47.5
MONOCYTES_40
47.4
MONOCYTES_41
47.4
MONOCYTES_42
47.4
MONOCYTES_43
47.4
MONOCYTES_44
47.1
MONOCYTES_45
47.0
MONOCYTES_46
46.8
MONOCYTES_47
46.8
MONOCYTES_48
46.5
MONOCYTES_49
46.3
MONOCYTES_50
46.0
MONOCYTES_51
46.0
MONOCYTES_52
45.9
MONOCYTES_53
45.8
MONOCYTES_54
45.8
MONOCYTES_55
45.6
MONOCYTES_56
45.4
MONOCYTES_57
45.4
MONOCYTES_58
45.3
MONOCYTES_59
45.2
MONOCYTES_60
44.9
MONOCYTES_61
44.6
MONOCYTES_62
44.0
MONOCYTES_63
44.0
MONOCYTES_64
43.9
MONOCYTES_65
43.8
MONOCYTES_66
43.7
MONOCYTES_67
43.6
MONOCYTES_68
43.5
MONOCYTES_69
43.5
MONOCYTES_70
43.1
MONOCYTES_71
42.8
MONOCYTES_72
42.7
MONOCYTES_73
42.6
MONOCYTES_74
42.5
MONOCYTES_75
41.8
MONOCYTES_76
41.8
MONOCYTES_77
41.4
MONOCYTES_78
41.3
MONOCYTES_79
41.3
MONOCYTES_80
41.2
MONOCYTES_81
41.0
MONOCYTES_82
40.3
MONOCYTES_83
40.3
MONOCYTES_84
39.5
MONOCYTES_85
39.4
MONOCYTES_86
39.2
MONOCYTES_87
39.1
MONOCYTES_88
37.2
MONOCYTES_89
37.0
MONOCYTES_90
36.4
MONOCYTES_91
35.0
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Non-classical monocyte TPM: 44.2
Samples: 90
Max TPM: 53.4
Min TPM: 36.4
M2_1
53.4
M2_2
52.1
M2_3
50.8
M2_4
50.5
M2_5
50.1
M2_6
49.8
M2_7
49.8
M2_8
49.6
M2_9
48.8
M2_10
48.6
M2_11
48.4
M2_12
47.8
M2_13
47.4
M2_14
47.4
M2_15
47.2
M2_16
47.2
M2_17
47.2
M2_18
47.1
M2_19
47.1
M2_20
47.0
M2_21
46.9
M2_22
46.9
M2_23
46.8
M2_24
46.5
M2_25
46.3
M2_26
46.2
M2_27
46.1
M2_28
46.0
M2_29
45.9
M2_30
45.8
M2_31
45.6
M2_32
45.6
M2_33
45.5
M2_34
45.5
M2_35
45.3
M2_36
45.2
M2_37
45.2
M2_38
45.1
M2_39
44.8
M2_40
44.8
M2_41
44.8
M2_42
44.7
M2_43
44.6
M2_44
44.5
M2_45
44.3
M2_46
44.2
M2_47
44.2
M2_48
44.2
M2_49
44.2
M2_50
43.9
M2_51
43.9
M2_52
43.8
M2_53
43.7
M2_54
43.7
M2_55
43.6
M2_56
43.3
M2_57
43.2
M2_58
43.1
M2_59
43.0
M2_60
42.8
M2_61
42.7
M2_62
42.5
M2_63
42.4
M2_64
42.3
M2_65
42.2
M2_66
42.1
M2_67
42.0
M2_68
41.9
M2_69
41.8
M2_70
41.7
M2_71
41.4
M2_72
41.0
M2_73
40.8
M2_74
40.7
M2_75
40.6
M2_76
40.2
M2_77
40.2
M2_78
39.9
M2_79
39.7
M2_80
39.4
M2_81
39.4
M2_82
39.2
M2_83
39.0
M2_84
38.8
M2_85
38.3
M2_86
37.9
M2_87
37.9
M2_88
37.6
M2_89
37.3
M2_90
36.4
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