A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9135.9
nTPM
Monaco:
789.6
nTPM
Schmiedel:
347.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9135.9
HPA sample
nTPM
Memory B-cell nTPM: 9135.9
Samples: 6
Max nTPM: 10210.4
Min nTPM: 8474.0
P10809_1017
8474.0
P10809_1025
10210.4
P10809_1044
8864.1
P10809_1063
9170.6
P10809_1092
9316.0
P10809_1105
8780.4
Naive B-cell nTPM: 7587.2
Samples: 6
Max nTPM: 8678.7
Min nTPM: 6689.2
P10809_1011
6689.2
P10809_1029
8095.4
P10809_1048
8678.7
P10809_1067
7489.1
P10809_1091
7125.1
P10809_1104
7445.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
789.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 789.6
Samples: 4
Max nTPM: 1413.7
Min nTPM: 183.2
RHH5310_R3677
758.2
RHH5218_R3590
183.2
RHH5247_R3619
1413.7
RHH5276_R3648
803.3
Naive B-cell nTPM: 581.0
Samples: 4
Max nTPM: 1052.9
Min nTPM: 237.8
RHH5308_R3675
607.5
RHH5216_R3588
237.8
RHH5245_R3617
1052.9
RHH5274_R3646
425.8
Non-switched memory B-cell nTPM: 486.0
Samples: 4
Max nTPM: 733.6
Min nTPM: 236.5
RHH5309_R3676
683.6
RHH5217_R3589
236.5
RHH5246_R3618
290.4
RHH5275_R3647
733.6
Plasmablast nTPM: 749.3
Samples: 4
Max nTPM: 943.4
Min nTPM: 410.8
RHH5312_R3679
943.4
RHH5220_R3592
410.8
RHH5249_R3621
797.9
RHH5278_R3650
844.9
Switched memory B-cell nTPM: 533.9
Samples: 4
Max nTPM: 813.3
Min nTPM: 324.6
RHH5311_R3678
813.3
RHH5219_R3591
368.1
RHH5248_R3620
324.6
RHH5277_R3649
629.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
347.5
Schmiedel sample id
TPM
Naive B-cell TPM: 347.5
Samples: 91
Max TPM: 596.1
Min TPM: 106.8
B_CELL_NAIVE_1
596.1
B_CELL_NAIVE_2
584.3
B_CELL_NAIVE_3
577.5
B_CELL_NAIVE_4
562.3
B_CELL_NAIVE_5
555.5
B_CELL_NAIVE_6
546.9
B_CELL_NAIVE_7
546.1
B_CELL_NAIVE_8
523.1
B_CELL_NAIVE_9
522.3
B_CELL_NAIVE_10
515.1
B_CELL_NAIVE_11
507.1
B_CELL_NAIVE_12
497.3
B_CELL_NAIVE_13
488.6
B_CELL_NAIVE_14
477.6
B_CELL_NAIVE_15
476.1
B_CELL_NAIVE_16
466.4
B_CELL_NAIVE_17
457.8
B_CELL_NAIVE_18
456.6
B_CELL_NAIVE_19
456.4
B_CELL_NAIVE_20
453.8
B_CELL_NAIVE_21
451.0
B_CELL_NAIVE_22
447.0
B_CELL_NAIVE_23
443.4
B_CELL_NAIVE_24
434.7
B_CELL_NAIVE_25
432.2
B_CELL_NAIVE_26
428.7
B_CELL_NAIVE_27
427.9
B_CELL_NAIVE_28
426.5
B_CELL_NAIVE_29
426.3
B_CELL_NAIVE_30
424.1
B_CELL_NAIVE_31
417.2
B_CELL_NAIVE_32
406.3
B_CELL_NAIVE_33
400.2
B_CELL_NAIVE_34
390.5
B_CELL_NAIVE_35
385.8
B_CELL_NAIVE_36
385.0
B_CELL_NAIVE_37
381.3
B_CELL_NAIVE_38
379.9
B_CELL_NAIVE_39
371.8
B_CELL_NAIVE_40
370.5
B_CELL_NAIVE_41
368.2
B_CELL_NAIVE_42
366.7
B_CELL_NAIVE_43
365.1
B_CELL_NAIVE_44
356.3
B_CELL_NAIVE_45
353.7
B_CELL_NAIVE_46
344.5
B_CELL_NAIVE_47
339.2
B_CELL_NAIVE_48
336.0
B_CELL_NAIVE_49
334.7
B_CELL_NAIVE_50
334.1
B_CELL_NAIVE_51
332.2
B_CELL_NAIVE_52
329.5
B_CELL_NAIVE_53
323.0
B_CELL_NAIVE_54
322.9
B_CELL_NAIVE_55
321.6
B_CELL_NAIVE_56
321.2
B_CELL_NAIVE_57
318.9
B_CELL_NAIVE_58
314.4
B_CELL_NAIVE_59
311.8
B_CELL_NAIVE_60
303.8
B_CELL_NAIVE_61
299.6
B_CELL_NAIVE_62
286.0
B_CELL_NAIVE_63
280.7
B_CELL_NAIVE_64
276.2
B_CELL_NAIVE_65
275.5
B_CELL_NAIVE_66
275.4
B_CELL_NAIVE_67
274.7
B_CELL_NAIVE_68
263.6
B_CELL_NAIVE_69
262.1
B_CELL_NAIVE_70
246.3
B_CELL_NAIVE_71
238.4
B_CELL_NAIVE_72
237.4
B_CELL_NAIVE_73
235.0
B_CELL_NAIVE_74
228.8
B_CELL_NAIVE_75
221.1
B_CELL_NAIVE_76
212.0
B_CELL_NAIVE_77
200.2
B_CELL_NAIVE_78
178.1
B_CELL_NAIVE_79
173.7
B_CELL_NAIVE_80
172.5
B_CELL_NAIVE_81
172.4
B_CELL_NAIVE_82
169.7
B_CELL_NAIVE_83
154.1
B_CELL_NAIVE_84
153.8
B_CELL_NAIVE_85
153.5
B_CELL_NAIVE_86
149.3
B_CELL_NAIVE_87
145.2
B_CELL_NAIVE_88
131.1
B_CELL_NAIVE_89
128.0
B_CELL_NAIVE_90
127.6
B_CELL_NAIVE_91
106.8
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