A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5159.1
nTPM
Monaco:
159.8
nTPM
Schmiedel:
259.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5159.1
HPA sample
nTPM
NK-cell nTPM: 5159.1
Samples: 6
Max nTPM: 6577.2
Min nTPM: 2511.1
P10809_1013
5349.0
P10809_1033
6577.2
P10809_1052
5394.5
P10809_1071
5511.1
P10809_1093
2511.1
P10809_1103
5611.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
159.8
Monaco sample
nTPM
NK-cell nTPM: 159.8
Samples: 4
Max nTPM: 176.9
Min nTPM: 143.2
RHH5316_R3683
176.9
RHH5224_R3596
150.1
RHH5253_R3625
169.1
RHH5282_R3654
143.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
259.1
Schmiedel sample id
TPM
NK-cell TPM: 259.1
Samples: 90
Max TPM: 470.2
Min TPM: 116.8
NK_1
470.2
NK_2
433.6
NK_3
419.0
NK_4
414.5
NK_5
395.1
NK_6
387.9
NK_7
386.0
NK_8
375.5
NK_9
354.6
NK_10
344.3
NK_11
333.0
NK_12
327.8
NK_13
326.4
NK_14
325.4
NK_15
324.4
NK_16
317.1
NK_17
314.1
NK_18
313.9
NK_19
313.5
NK_20
313.5
NK_21
312.4
NK_22
311.5
NK_23
309.8
NK_24
309.3
NK_25
306.5
NK_26
299.4
NK_27
298.0
NK_28
297.0
NK_29
291.9
NK_30
288.3
NK_31
288.1
NK_32
286.8
NK_33
282.7
NK_34
279.7
NK_35
279.0
NK_36
278.0
NK_37
275.2
NK_38
273.0
NK_39
272.7
NK_40
269.9
NK_41
265.9
NK_42
265.2
NK_43
264.6
NK_44
263.0
NK_45
260.9
NK_46
257.8
NK_47
257.1
NK_48
256.8
NK_49
253.8
NK_50
252.8
NK_51
252.7
NK_52
250.9
NK_53
249.6
NK_54
249.2
NK_55
243.7
NK_56
239.6
NK_57
237.8
NK_58
229.7
NK_59
227.5
NK_60
224.3
NK_61
223.7
NK_62
214.8
NK_63
214.3
NK_64
212.9
NK_65
211.5
NK_66
211.0
NK_67
210.7
NK_68
206.7
NK_69
204.2
NK_70
199.6
NK_71
198.2
NK_72
195.3
NK_73
194.3
NK_74
190.3
NK_75
186.3
NK_76
181.0
NK_77
180.2
NK_78
170.4
NK_79
161.7
NK_80
159.2
NK_81
157.8
NK_82
153.5
NK_83
151.6
NK_84
146.3
NK_85
142.8
NK_86
140.6
NK_87
132.8
NK_88
129.9
NK_89
117.6
NK_90
116.8
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