A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5374.7
nTPM
Monaco:
424.8
nTPM
Schmiedel:
318.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5374.7
HPA sample
nTPM
Classical monocyte nTPM: 5374.7
Samples: 6
Max nTPM: 10810.9
Min nTPM: 3365.4
P10809_1003
10810.9
P10809_1020
4529.2
P10809_1039
3667.1
P10809_1058
4841.7
P10809_1080
3365.4
P10809_1107
5033.8
Intermediate monocyte nTPM: 3689.9
Samples: 6
Max nTPM: 5151.5
Min nTPM: 2579.1
P10809_1004
3086.3
P10809_1023
4389.9
P10809_1042
3830.1
P10809_1061
2579.1
P10809_1081
3102.3
P10809_1108
5151.5
Non-classical monocyte nTPM: 2152.2
Samples: 5
Max nTPM: 2827.2
Min nTPM: 1808.1
P10809_1005
2419.4
P10809_1053
1808.1
P10809_1072
1856.3
P10809_1082
1849.8
P10809_1109
2827.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
424.8
Monaco sample
nTPM
Classical monocyte nTPM: 314.7
Samples: 4
Max nTPM: 503.5
Min nTPM: 192.7
RHH5313_R3680
503.5
RHH5221_R3593
239.8
RHH5250_R3622
192.7
RHH5279_R3651
322.6
Intermediate monocyte nTPM: 424.8
Samples: 4
Max nTPM: 494.8
Min nTPM: 277.8
RHH5314_R3681
494.8
RHH5222_R3594
463.9
RHH5251_R3623
462.8
RHH5280_R3652
277.8
Non-classical monocyte nTPM: 222.6
Samples: 4
Max nTPM: 335.4
Min nTPM: 104.0
RHH5315_R3682
335.4
RHH5223_R3595
202.5
RHH5252_R3624
248.7
RHH5281_R3653
104.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
318.0
Schmiedel sample id
TPM
Classical monocyte TPM: 318.0
Samples: 91
Max TPM: 593.2
Min TPM: 136.9
MONOCYTES_1
593.2
MONOCYTES_2
556.0
MONOCYTES_3
524.0
MONOCYTES_4
520.6
MONOCYTES_5
519.9
MONOCYTES_6
509.9
MONOCYTES_7
499.2
MONOCYTES_8
495.4
MONOCYTES_9
473.5
MONOCYTES_10
470.1
MONOCYTES_11
469.9
MONOCYTES_12
467.9
MONOCYTES_13
462.2
MONOCYTES_14
445.9
MONOCYTES_15
442.7
MONOCYTES_16
441.5
MONOCYTES_17
439.8
MONOCYTES_18
436.4
MONOCYTES_19
428.8
MONOCYTES_20
427.9
MONOCYTES_21
414.9
MONOCYTES_22
409.7
MONOCYTES_23
405.7
MONOCYTES_24
402.7
MONOCYTES_25
402.4
MONOCYTES_26
402.3
MONOCYTES_27
402.1
MONOCYTES_28
400.4
MONOCYTES_29
396.4
MONOCYTES_30
390.7
MONOCYTES_31
385.0
MONOCYTES_32
370.2
MONOCYTES_33
368.5
MONOCYTES_34
349.8
MONOCYTES_35
345.4
MONOCYTES_36
329.6
MONOCYTES_37
328.3
MONOCYTES_38
328.3
MONOCYTES_39
326.1
MONOCYTES_40
322.4
MONOCYTES_41
321.8
MONOCYTES_42
318.7
MONOCYTES_43
318.6
MONOCYTES_44
313.0
MONOCYTES_45
303.2
MONOCYTES_46
300.9
MONOCYTES_47
298.9
MONOCYTES_48
293.6
MONOCYTES_49
293.0
MONOCYTES_50
281.2
MONOCYTES_51
280.5
MONOCYTES_52
280.4
MONOCYTES_53
276.9
MONOCYTES_54
270.4
MONOCYTES_55
270.0
MONOCYTES_56
264.9
MONOCYTES_57
262.5
MONOCYTES_58
261.4
MONOCYTES_59
256.2
MONOCYTES_60
252.3
MONOCYTES_61
249.1
MONOCYTES_62
248.8
MONOCYTES_63
244.4
MONOCYTES_64
244.2
MONOCYTES_65
235.9
MONOCYTES_66
226.7
MONOCYTES_67
226.6
MONOCYTES_68
226.1
MONOCYTES_69
225.2
MONOCYTES_70
223.1
MONOCYTES_71
217.7
MONOCYTES_72
217.6
MONOCYTES_73
211.7
MONOCYTES_74
207.2
MONOCYTES_75
206.1
MONOCYTES_76
204.5
MONOCYTES_77
195.5
MONOCYTES_78
189.0
MONOCYTES_79
184.2
MONOCYTES_80
181.1
MONOCYTES_81
180.8
MONOCYTES_82
176.3
MONOCYTES_83
175.6
MONOCYTES_84
171.4
MONOCYTES_85
165.6
MONOCYTES_86
157.8
MONOCYTES_87
153.2
MONOCYTES_88
152.8
MONOCYTES_89
141.0
MONOCYTES_90
139.9
MONOCYTES_91
136.9
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Non-classical monocyte TPM: 150.0
Samples: 90
Max TPM: 333.5
Min TPM: 53.2
M2_1
333.5
M2_2
270.5
M2_3
238.6
M2_4
235.7
M2_5
234.0
M2_6
233.8
M2_7
233.0
M2_8
226.9
M2_9
224.8
M2_10
222.4
M2_11
222.3
M2_12
213.0
M2_13
207.2
M2_14
204.7
M2_15
204.1
M2_16
202.5
M2_17
200.6
M2_18
198.1
M2_19
196.3
M2_20
194.2
M2_21
193.3
M2_22
190.4
M2_23
188.0
M2_24
186.5
M2_25
186.5
M2_26
185.7
M2_27
184.1
M2_28
183.2
M2_29
181.4
M2_30
173.2
M2_31
168.2
M2_32
167.6
M2_33
167.1
M2_34
166.7
M2_35
165.3
M2_36
164.9
M2_37
162.7
M2_38
161.3
M2_39
159.9
M2_40
158.9
M2_41
157.7
M2_42
155.2
M2_43
151.8
M2_44
149.0
M2_45
148.6
M2_46
147.9
M2_47
147.7
M2_48
147.7
M2_49
147.4
M2_50
147.0
M2_51
143.6
M2_52
143.5
M2_53
143.1
M2_54
141.6
M2_55
138.1
M2_56
136.7
M2_57
135.1
M2_58
125.3
M2_59
124.8
M2_60
124.5
M2_61
118.2
M2_62
117.4
M2_63
116.1
M2_64
115.2
M2_65
114.6
M2_66
113.8
M2_67
112.6
M2_68
112.0
M2_69
103.2
M2_70
98.2
M2_71
97.9
M2_72
95.2
M2_73
93.2
M2_74
93.1
M2_75
86.5
M2_76
83.7
M2_77
81.1
M2_78
80.8
M2_79
77.7
M2_80
77.3
M2_81
76.7
M2_82
73.5
M2_83
72.6
M2_84
72.5
M2_85
68.6
M2_86
66.1
M2_87
62.3
M2_88
59.7
M2_89
56.5
M2_90
53.2
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