A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.7
nTPM
Monaco:
119.8
nTPM
Schmiedel:
45.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.7
HPA sample
nTPM
Memory B-cell nTPM: 10.7
Samples: 6
Max nTPM: 15.8
Min nTPM: 3.4
P10809_1017
15.8
P10809_1025
10.6
P10809_1044
3.4
P10809_1063
11.2
P10809_1092
12.7
P10809_1105
10.4
Naive B-cell nTPM: 9.0
Samples: 6
Max nTPM: 19.4
Min nTPM: 5.0
P10809_1011
5.7
P10809_1029
8.0
P10809_1048
19.4
P10809_1067
5.0
P10809_1091
7.5
P10809_1104
8.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
119.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 50.9
Samples: 4
Max nTPM: 75.4
Min nTPM: 35.3
RHH5310_R3677
75.4
RHH5218_R3590
46.3
RHH5247_R3619
35.3
RHH5276_R3648
46.4
Naive B-cell nTPM: 33.9
Samples: 4
Max nTPM: 39.3
Min nTPM: 28.7
RHH5308_R3675
33.5
RHH5216_R3588
39.3
RHH5245_R3617
34.0
RHH5274_R3646
28.7
Non-switched memory B-cell nTPM: 44.7
Samples: 4
Max nTPM: 46.2
Min nTPM: 43.1
RHH5309_R3676
46.2
RHH5217_R3589
46.0
RHH5246_R3618
43.3
RHH5275_R3647
43.1
Plasmablast nTPM: 119.8
Samples: 4
Max nTPM: 131.3
Min nTPM: 104.5
RHH5312_R3679
131.3
RHH5220_R3592
119.7
RHH5249_R3621
123.7
RHH5278_R3650
104.5
Switched memory B-cell nTPM: 54.9
Samples: 4
Max nTPM: 62.6
Min nTPM: 40.7
RHH5311_R3678
62.0
RHH5219_R3591
40.7
RHH5248_R3620
62.6
RHH5277_R3649
54.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.4
Schmiedel sample id
TPM
Naive B-cell TPM: 45.4
Samples: 91
Max TPM: 68.1
Min TPM: 34.1
B_CELL_NAIVE_1
68.1
B_CELL_NAIVE_2
60.9
B_CELL_NAIVE_3
59.6
B_CELL_NAIVE_4
58.8
B_CELL_NAIVE_5
58.5
B_CELL_NAIVE_6
57.6
B_CELL_NAIVE_7
57.6
B_CELL_NAIVE_8
55.9
B_CELL_NAIVE_9
55.8
B_CELL_NAIVE_10
55.0
B_CELL_NAIVE_11
53.3
B_CELL_NAIVE_12
53.1
B_CELL_NAIVE_13
52.5
B_CELL_NAIVE_14
52.4
B_CELL_NAIVE_15
51.7
B_CELL_NAIVE_16
50.9
B_CELL_NAIVE_17
50.7
B_CELL_NAIVE_18
50.6
B_CELL_NAIVE_19
50.6
B_CELL_NAIVE_20
49.6
B_CELL_NAIVE_21
49.1
B_CELL_NAIVE_22
48.9
B_CELL_NAIVE_23
48.9
B_CELL_NAIVE_24
48.4
B_CELL_NAIVE_25
48.2
B_CELL_NAIVE_26
48.0
B_CELL_NAIVE_27
47.6
B_CELL_NAIVE_28
47.5
B_CELL_NAIVE_29
47.4
B_CELL_NAIVE_30
47.4
B_CELL_NAIVE_31
46.9
B_CELL_NAIVE_32
46.8
B_CELL_NAIVE_33
46.8
B_CELL_NAIVE_34
46.2
B_CELL_NAIVE_35
46.1
B_CELL_NAIVE_36
45.8
B_CELL_NAIVE_37
45.7
B_CELL_NAIVE_38
45.6
B_CELL_NAIVE_39
45.6
B_CELL_NAIVE_40
45.5
B_CELL_NAIVE_41
45.3
B_CELL_NAIVE_42
45.0
B_CELL_NAIVE_43
44.1
B_CELL_NAIVE_44
44.1
B_CELL_NAIVE_45
44.1
B_CELL_NAIVE_46
44.0
B_CELL_NAIVE_47
44.0
B_CELL_NAIVE_48
43.9
B_CELL_NAIVE_49
43.6
B_CELL_NAIVE_50
43.4
B_CELL_NAIVE_51
43.3
B_CELL_NAIVE_52
43.1
B_CELL_NAIVE_53
43.1
B_CELL_NAIVE_54
43.0
B_CELL_NAIVE_55
42.9
B_CELL_NAIVE_56
42.9
B_CELL_NAIVE_57
42.8
B_CELL_NAIVE_58
42.5
B_CELL_NAIVE_59
42.3
B_CELL_NAIVE_60
42.0
B_CELL_NAIVE_61
42.0
B_CELL_NAIVE_62
41.9
B_CELL_NAIVE_63
41.9
B_CELL_NAIVE_64
41.7
B_CELL_NAIVE_65
41.5
B_CELL_NAIVE_66
41.3
B_CELL_NAIVE_67
40.8
B_CELL_NAIVE_68
40.8
B_CELL_NAIVE_69
40.7
B_CELL_NAIVE_70
40.4
B_CELL_NAIVE_71
40.3
B_CELL_NAIVE_72
40.3
B_CELL_NAIVE_73
40.1
B_CELL_NAIVE_74
40.0
B_CELL_NAIVE_75
40.0
B_CELL_NAIVE_76
39.6
B_CELL_NAIVE_77
39.1
B_CELL_NAIVE_78
39.0
B_CELL_NAIVE_79
39.0
B_CELL_NAIVE_80
38.9
B_CELL_NAIVE_81
38.9
B_CELL_NAIVE_82
38.7
B_CELL_NAIVE_83
37.2
B_CELL_NAIVE_84
37.1
B_CELL_NAIVE_85
37.0
B_CELL_NAIVE_86
36.9
B_CELL_NAIVE_87
36.7
B_CELL_NAIVE_88
36.6
B_CELL_NAIVE_89
36.4
B_CELL_NAIVE_90
34.5
B_CELL_NAIVE_91
34.1
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The Human Protein Atlas project is funded
