A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.3
nTPM
Monaco:
70.7
nTPM
Schmiedel:
60.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.3
HPA sample
nTPM
Classical monocyte nTPM: 10.9
Samples: 6
Max nTPM: 13.1
Min nTPM: 8.9
P10809_1003
10.8
P10809_1020
13.1
P10809_1039
11.1
P10809_1058
8.9
P10809_1080
10.1
P10809_1107
11.5
Intermediate monocyte nTPM: 14.4
Samples: 6
Max nTPM: 22.1
Min nTPM: 8.7
P10809_1004
13.7
P10809_1023
22.1
P10809_1042
14.0
P10809_1061
8.7
P10809_1081
9.9
P10809_1108
17.8
Non-classical monocyte nTPM: 26.2
Samples: 5
Max nTPM: 54.6
Min nTPM: 13.8
P10809_1005
23.9
P10809_1053
17.3
P10809_1072
54.6
P10809_1082
13.8
P10809_1109
21.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.7
Monaco sample
nTPM
Classical monocyte nTPM: 63.4
Samples: 4
Max nTPM: 74.9
Min nTPM: 50.6
RHH5313_R3680
55.3
RHH5221_R3593
74.9
RHH5250_R3622
73.0
RHH5279_R3651
50.6
Intermediate monocyte nTPM: 68.1
Samples: 4
Max nTPM: 75.9
Min nTPM: 54.3
RHH5314_R3681
66.6
RHH5222_R3594
54.3
RHH5251_R3623
75.9
RHH5280_R3652
75.7
Non-classical monocyte nTPM: 70.7
Samples: 4
Max nTPM: 85.8
Min nTPM: 58.0
RHH5315_R3682
58.0
RHH5223_R3595
70.0
RHH5252_R3624
69.0
RHH5281_R3653
85.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.4
Schmiedel sample id
TPM
Classical monocyte TPM: 35.6
Samples: 91
Max TPM: 47.2
Min TPM: 25.6
MONOCYTES_1
47.2
MONOCYTES_2
44.4
MONOCYTES_3
44.1
MONOCYTES_4
44.0
MONOCYTES_5
43.4
MONOCYTES_6
43.3
MONOCYTES_7
43.2
MONOCYTES_8
42.9
MONOCYTES_9
42.6
MONOCYTES_10
42.4
MONOCYTES_11
42.0
MONOCYTES_12
41.3
MONOCYTES_13
41.2
MONOCYTES_14
41.2
MONOCYTES_15
40.1
MONOCYTES_16
39.7
MONOCYTES_17
39.3
MONOCYTES_18
39.3
MONOCYTES_19
39.2
MONOCYTES_20
39.1
MONOCYTES_21
38.9
MONOCYTES_22
38.8
MONOCYTES_23
38.3
MONOCYTES_24
38.0
MONOCYTES_25
37.5
MONOCYTES_26
37.2
MONOCYTES_27
37.1
MONOCYTES_28
36.9
MONOCYTES_29
36.9
MONOCYTES_30
36.8
MONOCYTES_31
36.8
MONOCYTES_32
36.6
MONOCYTES_33
36.5
MONOCYTES_34
36.2
MONOCYTES_35
36.1
MONOCYTES_36
35.9
MONOCYTES_37
35.9
MONOCYTES_38
35.8
MONOCYTES_39
35.8
MONOCYTES_40
35.8
MONOCYTES_41
35.7
MONOCYTES_42
35.6
MONOCYTES_43
35.4
MONOCYTES_44
35.2
MONOCYTES_45
35.2
MONOCYTES_46
35.2
MONOCYTES_47
35.1
MONOCYTES_48
35.1
MONOCYTES_49
35.0
MONOCYTES_50
34.9
MONOCYTES_51
34.8
MONOCYTES_52
34.7
MONOCYTES_53
34.6
MONOCYTES_54
34.5
MONOCYTES_55
34.3
MONOCYTES_56
34.2
MONOCYTES_57
33.8
MONOCYTES_58
33.7
MONOCYTES_59
33.5
MONOCYTES_60
33.5
MONOCYTES_61
33.5
MONOCYTES_62
33.5
MONOCYTES_63
33.3
MONOCYTES_64
33.3
MONOCYTES_65
33.2
MONOCYTES_66
33.2
MONOCYTES_67
33.1
MONOCYTES_68
32.6
MONOCYTES_69
32.6
MONOCYTES_70
32.4
MONOCYTES_71
32.3
MONOCYTES_72
32.1
MONOCYTES_73
32.1
MONOCYTES_74
32.1
MONOCYTES_75
32.1
MONOCYTES_76
32.1
MONOCYTES_77
31.9
MONOCYTES_78
31.7
MONOCYTES_79
31.7
MONOCYTES_80
31.6
MONOCYTES_81
31.2
MONOCYTES_82
30.8
MONOCYTES_83
30.7
MONOCYTES_84
30.6
MONOCYTES_85
29.8
MONOCYTES_86
28.5
MONOCYTES_87
28.4
MONOCYTES_88
28.4
MONOCYTES_89
27.6
MONOCYTES_90
27.4
MONOCYTES_91
25.6
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Non-classical monocyte TPM: 60.4
Samples: 90
Max TPM: 80.8
Min TPM: 42.4
M2_1
80.8
M2_2
78.9
M2_3
78.8
M2_4
76.2
M2_5
75.7
M2_6
73.5
M2_7
73.5
M2_8
73.4
M2_9
73.0
M2_10
72.5
M2_11
71.2
M2_12
70.3
M2_13
69.5
M2_14
68.3
M2_15
67.2
M2_16
67.0
M2_17
66.9
M2_18
66.7
M2_19
66.6
M2_20
66.0
M2_21
65.7
M2_22
65.3
M2_23
65.3
M2_24
64.5
M2_25
64.2
M2_26
64.0
M2_27
64.0
M2_28
63.9
M2_29
63.8
M2_30
63.8
M2_31
63.7
M2_32
63.4
M2_33
63.2
M2_34
63.0
M2_35
62.6
M2_36
62.5
M2_37
61.2
M2_38
61.2
M2_39
61.1
M2_40
60.9
M2_41
59.6
M2_42
59.4
M2_43
59.2
M2_44
59.2
M2_45
59.1
M2_46
59.1
M2_47
59.0
M2_48
58.6
M2_49
58.4
M2_50
58.2
M2_51
58.1
M2_52
58.0
M2_53
58.0
M2_54
57.6
M2_55
57.4
M2_56
57.4
M2_57
57.2
M2_58
57.1
M2_59
56.9
M2_60
56.6
M2_61
56.5
M2_62
56.3
M2_63
56.1
M2_64
55.9
M2_65
55.6
M2_66
54.5
M2_67
54.3
M2_68
54.2
M2_69
54.2
M2_70
54.1
M2_71
54.1
M2_72
53.3
M2_73
53.2
M2_74
53.2
M2_75
53.2
M2_76
53.0
M2_77
52.9
M2_78
52.6
M2_79
52.6
M2_80
52.5
M2_81
52.5
M2_82
52.5
M2_83
51.1
M2_84
49.9
M2_85
49.1
M2_86
49.1
M2_87
47.9
M2_88
47.8
M2_89
46.8
M2_90
42.4
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