A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.6
nTPM
Monaco:
63.7
nTPM
Schmiedel:
63.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.6
HPA sample
nTPM
NK-cell nTPM: 13.6
Samples: 6
Max nTPM: 16.2
Min nTPM: 10.3
P10809_1013
11.4
P10809_1033
10.3
P10809_1052
15.7
P10809_1071
16.2
P10809_1093
12.3
P10809_1103
15.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.7
Monaco sample
nTPM
NK-cell nTPM: 63.7
Samples: 4
Max nTPM: 78.8
Min nTPM: 52.6
RHH5316_R3683
63.0
RHH5224_R3596
60.3
RHH5253_R3625
52.6
RHH5282_R3654
78.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.1
Schmiedel sample id
TPM
NK-cell TPM: 63.1
Samples: 90
Max TPM: 90.2
Min TPM: 47.0
NK_1
90.2
NK_2
87.7
NK_3
86.7
NK_4
82.2
NK_5
81.7
NK_6
80.1
NK_7
80.0
NK_8
78.0
NK_9
76.9
NK_10
76.5
NK_11
75.6
NK_12
75.5
NK_13
75.4
NK_14
74.8
NK_15
74.3
NK_16
73.4
NK_17
73.0
NK_18
70.8
NK_19
69.7
NK_20
68.8
NK_21
68.5
NK_22
68.5
NK_23
68.4
NK_24
67.2
NK_25
66.5
NK_26
66.1
NK_27
66.1
NK_28
65.6
NK_29
65.4
NK_30
65.4
NK_31
65.2
NK_32
65.1
NK_33
64.9
NK_34
64.7
NK_35
64.5
NK_36
64.3
NK_37
64.0
NK_38
63.2
NK_39
62.9
NK_40
62.6
NK_41
62.2
NK_42
62.2
NK_43
62.1
NK_44
62.0
NK_45
62.0
NK_46
61.8
NK_47
61.2
NK_48
61.1
NK_49
60.8
NK_50
60.6
NK_51
60.6
NK_52
60.1
NK_53
60.0
NK_54
59.9
NK_55
59.9
NK_56
59.3
NK_57
59.1
NK_58
58.9
NK_59
58.5
NK_60
58.3
NK_61
58.2
NK_62
57.6
NK_63
57.4
NK_64
57.4
NK_65
57.2
NK_66
56.8
NK_67
56.4
NK_68
56.2
NK_69
55.1
NK_70
55.1
NK_71
54.8
NK_72
54.6
NK_73
54.5
NK_74
54.2
NK_75
53.8
NK_76
53.8
NK_77
53.6
NK_78
53.3
NK_79
53.3
NK_80
53.0
NK_81
52.8
NK_82
52.2
NK_83
51.1
NK_84
50.8
NK_85
50.4
NK_86
50.0
NK_87
49.0
NK_88
48.6
NK_89
47.5
NK_90
47.0
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