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BETA
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  • RPS24
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:2807.7 nTPM
Monaco:429.9 nTPM
Schmiedel:405.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2807.7
HPA sample nTPM
Memory B-cell
nTPM: 2807.7
Samples: 6

Max nTPM: 3304.1
Min nTPM: 2361.5
P10809_1017 2361.5
P10809_1025 2853.4
P10809_1044 3304.1
P10809_1063 2951.6
P10809_1092 2666.9
P10809_1105 2708.9
Naive B-cell
nTPM: 2391.6
Samples: 6

Max nTPM: 3390.7
Min nTPM: 1708.2
P10809_1011 1708.2
P10809_1029 2267.9
P10809_1048 3390.7
P10809_1067 2518.5
P10809_1091 1973.6
P10809_1104 2490.8

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

429.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 429.9
Samples: 4

Max nTPM: 769.4
Min nTPM: 91.7
RHH5310_R3677 340.3
RHH5218_R3590 91.7
RHH5247_R3619 769.4
RHH5276_R3648 518.3
Naive B-cell
nTPM: 371.8
Samples: 4

Max nTPM: 667.5
Min nTPM: 130.9
RHH5308_R3675 383.3
RHH5216_R3588 130.9
RHH5245_R3617 667.5
RHH5274_R3646 305.4
Non-switched memory B-cell
nTPM: 318.6
Samples: 4

Max nTPM: 526.7
Min nTPM: 152.2
RHH5309_R3676 418.2
RHH5217_R3589 152.2
RHH5246_R3618 177.2
RHH5275_R3647 526.7
Plasmablast
nTPM: 370.4
Samples: 4

Max nTPM: 451.9
Min nTPM: 199.1
RHH5312_R3679 449.2
RHH5220_R3592 199.1
RHH5249_R3621 381.3
RHH5278_R3650 451.9
Switched memory B-cell
nTPM: 268.5
Samples: 4

Max nTPM: 419.9
Min nTPM: 150.1
RHH5311_R3678 296.2
RHH5219_R3591 207.7
RHH5248_R3620 150.1
RHH5277_R3649 419.9

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

405.9
Schmiedel sample id TPM
Naive B-cell
TPM: 405.9
Samples: 91

Max TPM: 568.0
Min TPM: 208.7
B_CELL_NAIVE_1 568.0
B_CELL_NAIVE_2 533.2
B_CELL_NAIVE_3 521.2
B_CELL_NAIVE_4 503.8
B_CELL_NAIVE_5 498.6
B_CELL_NAIVE_6 494.3
B_CELL_NAIVE_7 486.0
B_CELL_NAIVE_8 484.5
B_CELL_NAIVE_9 480.5
B_CELL_NAIVE_10 480.5
B_CELL_NAIVE_11 475.3
B_CELL_NAIVE_12 473.7
B_CELL_NAIVE_13 471.7
B_CELL_NAIVE_14 469.8
B_CELL_NAIVE_15 468.5
B_CELL_NAIVE_16 467.6
B_CELL_NAIVE_17 457.7
B_CELL_NAIVE_18 451.3
B_CELL_NAIVE_19 449.7
B_CELL_NAIVE_20 448.9
B_CELL_NAIVE_21 446.5
B_CELL_NAIVE_22 445.2
B_CELL_NAIVE_23 444.7
B_CELL_NAIVE_24 441.4
B_CELL_NAIVE_25 440.0
B_CELL_NAIVE_26 438.0
B_CELL_NAIVE_27 437.2
B_CELL_NAIVE_28 436.9
B_CELL_NAIVE_29 436.7
B_CELL_NAIVE_30 435.4
B_CELL_NAIVE_31 432.3
B_CELL_NAIVE_32 431.6
B_CELL_NAIVE_33 427.9
B_CELL_NAIVE_34 426.2
B_CELL_NAIVE_35 425.9
B_CELL_NAIVE_36 425.4
B_CELL_NAIVE_37 420.6
B_CELL_NAIVE_38 418.1
B_CELL_NAIVE_39 414.8
B_CELL_NAIVE_40 414.0
B_CELL_NAIVE_41 412.8
B_CELL_NAIVE_42 412.8
B_CELL_NAIVE_43 411.9
B_CELL_NAIVE_44 411.1
B_CELL_NAIVE_45 409.3
B_CELL_NAIVE_46 407.7
B_CELL_NAIVE_47 403.7
B_CELL_NAIVE_48 402.2
B_CELL_NAIVE_49 401.9
B_CELL_NAIVE_50 398.8
B_CELL_NAIVE_51 396.0
B_CELL_NAIVE_52 394.6
B_CELL_NAIVE_53 394.3
B_CELL_NAIVE_54 393.5
B_CELL_NAIVE_55 391.3
B_CELL_NAIVE_56 389.7
B_CELL_NAIVE_57 386.2
B_CELL_NAIVE_58 383.0
B_CELL_NAIVE_59 382.2
B_CELL_NAIVE_60 380.6
B_CELL_NAIVE_61 378.5
B_CELL_NAIVE_62 378.5
B_CELL_NAIVE_63 376.4
B_CELL_NAIVE_64 375.8
B_CELL_NAIVE_65 373.2
B_CELL_NAIVE_66 373.1
B_CELL_NAIVE_67 369.7
B_CELL_NAIVE_68 369.0
B_CELL_NAIVE_69 365.1
B_CELL_NAIVE_70 363.8
B_CELL_NAIVE_71 361.5
B_CELL_NAIVE_72 358.9
B_CELL_NAIVE_73 357.8
B_CELL_NAIVE_74 356.9
B_CELL_NAIVE_75 356.8
B_CELL_NAIVE_76 356.1
B_CELL_NAIVE_77 354.7
B_CELL_NAIVE_78 353.6
B_CELL_NAIVE_79 348.9
B_CELL_NAIVE_80 345.8
B_CELL_NAIVE_81 341.3
B_CELL_NAIVE_82 341.0
B_CELL_NAIVE_83 330.7
B_CELL_NAIVE_84 320.3
B_CELL_NAIVE_85 318.3
B_CELL_NAIVE_86 316.5
B_CELL_NAIVE_87 315.8
B_CELL_NAIVE_88 315.2
B_CELL_NAIVE_89 284.9
B_CELL_NAIVE_90 282.5
B_CELL_NAIVE_91 208.7
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