A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2807.7
nTPM
Monaco:
429.9
nTPM
Schmiedel:
405.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2807.7
HPA sample
nTPM
Memory B-cell nTPM: 2807.7
Samples: 6
Max nTPM: 3304.1
Min nTPM: 2361.5
P10809_1017
2361.5
P10809_1025
2853.4
P10809_1044
3304.1
P10809_1063
2951.6
P10809_1092
2666.9
P10809_1105
2708.9
Naive B-cell nTPM: 2391.6
Samples: 6
Max nTPM: 3390.7
Min nTPM: 1708.2
P10809_1011
1708.2
P10809_1029
2267.9
P10809_1048
3390.7
P10809_1067
2518.5
P10809_1091
1973.6
P10809_1104
2490.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
429.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 429.9
Samples: 4
Max nTPM: 769.4
Min nTPM: 91.7
RHH5310_R3677
340.3
RHH5218_R3590
91.7
RHH5247_R3619
769.4
RHH5276_R3648
518.3
Naive B-cell nTPM: 371.8
Samples: 4
Max nTPM: 667.5
Min nTPM: 130.9
RHH5308_R3675
383.3
RHH5216_R3588
130.9
RHH5245_R3617
667.5
RHH5274_R3646
305.4
Non-switched memory B-cell nTPM: 318.6
Samples: 4
Max nTPM: 526.7
Min nTPM: 152.2
RHH5309_R3676
418.2
RHH5217_R3589
152.2
RHH5246_R3618
177.2
RHH5275_R3647
526.7
Plasmablast nTPM: 370.4
Samples: 4
Max nTPM: 451.9
Min nTPM: 199.1
RHH5312_R3679
449.2
RHH5220_R3592
199.1
RHH5249_R3621
381.3
RHH5278_R3650
451.9
Switched memory B-cell nTPM: 268.5
Samples: 4
Max nTPM: 419.9
Min nTPM: 150.1
RHH5311_R3678
296.2
RHH5219_R3591
207.7
RHH5248_R3620
150.1
RHH5277_R3649
419.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
405.9
Schmiedel sample id
TPM
Naive B-cell TPM: 405.9
Samples: 91
Max TPM: 568.0
Min TPM: 208.7
B_CELL_NAIVE_1
568.0
B_CELL_NAIVE_2
533.2
B_CELL_NAIVE_3
521.2
B_CELL_NAIVE_4
503.8
B_CELL_NAIVE_5
498.6
B_CELL_NAIVE_6
494.3
B_CELL_NAIVE_7
486.0
B_CELL_NAIVE_8
484.5
B_CELL_NAIVE_9
480.5
B_CELL_NAIVE_10
480.5
B_CELL_NAIVE_11
475.3
B_CELL_NAIVE_12
473.7
B_CELL_NAIVE_13
471.7
B_CELL_NAIVE_14
469.8
B_CELL_NAIVE_15
468.5
B_CELL_NAIVE_16
467.6
B_CELL_NAIVE_17
457.7
B_CELL_NAIVE_18
451.3
B_CELL_NAIVE_19
449.7
B_CELL_NAIVE_20
448.9
B_CELL_NAIVE_21
446.5
B_CELL_NAIVE_22
445.2
B_CELL_NAIVE_23
444.7
B_CELL_NAIVE_24
441.4
B_CELL_NAIVE_25
440.0
B_CELL_NAIVE_26
438.0
B_CELL_NAIVE_27
437.2
B_CELL_NAIVE_28
436.9
B_CELL_NAIVE_29
436.7
B_CELL_NAIVE_30
435.4
B_CELL_NAIVE_31
432.3
B_CELL_NAIVE_32
431.6
B_CELL_NAIVE_33
427.9
B_CELL_NAIVE_34
426.2
B_CELL_NAIVE_35
425.9
B_CELL_NAIVE_36
425.4
B_CELL_NAIVE_37
420.6
B_CELL_NAIVE_38
418.1
B_CELL_NAIVE_39
414.8
B_CELL_NAIVE_40
414.0
B_CELL_NAIVE_41
412.8
B_CELL_NAIVE_42
412.8
B_CELL_NAIVE_43
411.9
B_CELL_NAIVE_44
411.1
B_CELL_NAIVE_45
409.3
B_CELL_NAIVE_46
407.7
B_CELL_NAIVE_47
403.7
B_CELL_NAIVE_48
402.2
B_CELL_NAIVE_49
401.9
B_CELL_NAIVE_50
398.8
B_CELL_NAIVE_51
396.0
B_CELL_NAIVE_52
394.6
B_CELL_NAIVE_53
394.3
B_CELL_NAIVE_54
393.5
B_CELL_NAIVE_55
391.3
B_CELL_NAIVE_56
389.7
B_CELL_NAIVE_57
386.2
B_CELL_NAIVE_58
383.0
B_CELL_NAIVE_59
382.2
B_CELL_NAIVE_60
380.6
B_CELL_NAIVE_61
378.5
B_CELL_NAIVE_62
378.5
B_CELL_NAIVE_63
376.4
B_CELL_NAIVE_64
375.8
B_CELL_NAIVE_65
373.2
B_CELL_NAIVE_66
373.1
B_CELL_NAIVE_67
369.7
B_CELL_NAIVE_68
369.0
B_CELL_NAIVE_69
365.1
B_CELL_NAIVE_70
363.8
B_CELL_NAIVE_71
361.5
B_CELL_NAIVE_72
358.9
B_CELL_NAIVE_73
357.8
B_CELL_NAIVE_74
356.9
B_CELL_NAIVE_75
356.8
B_CELL_NAIVE_76
356.1
B_CELL_NAIVE_77
354.7
B_CELL_NAIVE_78
353.6
B_CELL_NAIVE_79
348.9
B_CELL_NAIVE_80
345.8
B_CELL_NAIVE_81
341.3
B_CELL_NAIVE_82
341.0
B_CELL_NAIVE_83
330.7
B_CELL_NAIVE_84
320.3
B_CELL_NAIVE_85
318.3
B_CELL_NAIVE_86
316.5
B_CELL_NAIVE_87
315.8
B_CELL_NAIVE_88
315.2
B_CELL_NAIVE_89
284.9
B_CELL_NAIVE_90
282.5
B_CELL_NAIVE_91
208.7
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