A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2808.4
nTPM
Monaco:
165.4
nTPM
Schmiedel:
364.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2808.4
HPA sample
nTPM
NK-cell nTPM: 2808.4
Samples: 6
Max nTPM: 3607.9
Min nTPM: 1546.5
P10809_1013
2516.7
P10809_1033
3298.2
P10809_1052
2895.9
P10809_1071
3607.9
P10809_1093
1546.5
P10809_1103
2985.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
165.4
Monaco sample
nTPM
NK-cell nTPM: 165.4
Samples: 4
Max nTPM: 179.6
Min nTPM: 131.7
RHH5316_R3683
179.6
RHH5224_R3596
131.7
RHH5253_R3625
177.9
RHH5282_R3654
172.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
364.4
Schmiedel sample id
TPM
NK-cell TPM: 364.4
Samples: 90
Max TPM: 535.3
Min TPM: 241.7
NK_1
535.3
NK_2
524.0
NK_3
503.9
NK_4
502.9
NK_5
482.4
NK_6
452.0
NK_7
449.9
NK_8
445.1
NK_9
444.0
NK_10
441.5
NK_11
428.5
NK_12
417.4
NK_13
415.4
NK_14
414.2
NK_15
410.4
NK_16
410.0
NK_17
409.1
NK_18
406.1
NK_19
403.4
NK_20
400.6
NK_21
399.1
NK_22
398.6
NK_23
398.3
NK_24
397.0
NK_25
396.2
NK_26
394.0
NK_27
386.8
NK_28
385.1
NK_29
384.3
NK_30
381.6
NK_31
381.4
NK_32
379.6
NK_33
378.9
NK_34
376.3
NK_35
376.1
NK_36
374.7
NK_37
374.2
NK_38
369.6
NK_39
368.6
NK_40
365.6
NK_41
365.1
NK_42
364.0
NK_43
360.9
NK_44
360.2
NK_45
359.5
NK_46
358.8
NK_47
358.6
NK_48
356.4
NK_49
352.3
NK_50
351.4
NK_51
351.1
NK_52
350.6
NK_53
350.3
NK_54
349.7
NK_55
349.4
NK_56
349.3
NK_57
347.5
NK_58
343.1
NK_59
341.0
NK_60
340.7
NK_61
339.0
NK_62
338.9
NK_63
335.7
NK_64
331.7
NK_65
328.7
NK_66
328.4
NK_67
327.8
NK_68
324.4
NK_69
323.5
NK_70
320.6
NK_71
318.7
NK_72
317.1
NK_73
311.9
NK_74
309.2
NK_75
308.9
NK_76
307.6
NK_77
306.7
NK_78
304.7
NK_79
304.3
NK_80
301.2
NK_81
298.0
NK_82
298.0
NK_83
295.7
NK_84
289.6
NK_85
288.9
NK_86
282.7
NK_87
269.2
NK_88
266.2
NK_89
259.0
NK_90
241.7
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