A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2128.3
nTPM
Monaco:
393.6
nTPM
Schmiedel:
478.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2128.3
HPA sample
nTPM
Classical monocyte nTPM: 2128.3
Samples: 6
Max nTPM: 3532.2
Min nTPM: 1244.8
P10809_1003
3532.2
P10809_1020
1915.8
P10809_1039
2045.4
P10809_1058
1952.7
P10809_1080
1244.8
P10809_1107
2078.9
Intermediate monocyte nTPM: 2039.9
Samples: 6
Max nTPM: 2834.3
Min nTPM: 1491.9
P10809_1004
1491.9
P10809_1023
2459.1
P10809_1042
2084.5
P10809_1061
1657.4
P10809_1081
1712.1
P10809_1108
2834.3
Non-classical monocyte nTPM: 1634.6
Samples: 5
Max nTPM: 2198.0
Min nTPM: 1297.9
P10809_1005
1615.2
P10809_1053
1524.6
P10809_1072
1297.9
P10809_1082
1537.2
P10809_1109
2198.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
393.6
Monaco sample
nTPM
Classical monocyte nTPM: 266.1
Samples: 4
Max nTPM: 326.4
Min nTPM: 189.8
RHH5313_R3680
326.4
RHH5221_R3593
252.3
RHH5250_R3622
189.8
RHH5279_R3651
295.9
Intermediate monocyte nTPM: 393.6
Samples: 4
Max nTPM: 480.4
Min nTPM: 255.2
RHH5314_R3681
396.1
RHH5222_R3594
480.4
RHH5251_R3623
442.8
RHH5280_R3652
255.2
Non-classical monocyte nTPM: 296.2
Samples: 4
Max nTPM: 354.9
Min nTPM: 181.0
RHH5315_R3682
354.5
RHH5223_R3595
294.4
RHH5252_R3624
354.9
RHH5281_R3653
181.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
478.0
Schmiedel sample id
TPM
Classical monocyte TPM: 478.0
Samples: 91
Max TPM: 670.8
Min TPM: 323.7
MONOCYTES_1
670.8
MONOCYTES_2
611.8
MONOCYTES_3
606.3
MONOCYTES_4
599.1
MONOCYTES_5
572.1
MONOCYTES_6
558.2
MONOCYTES_7
554.7
MONOCYTES_8
541.0
MONOCYTES_9
535.9
MONOCYTES_10
534.3
MONOCYTES_11
534.0
MONOCYTES_12
533.9
MONOCYTES_13
531.3
MONOCYTES_14
527.9
MONOCYTES_15
526.3
MONOCYTES_16
522.7
MONOCYTES_17
520.6
MONOCYTES_18
518.4
MONOCYTES_19
517.7
MONOCYTES_20
516.5
MONOCYTES_21
516.4
MONOCYTES_22
514.7
MONOCYTES_23
513.6
MONOCYTES_24
512.1
MONOCYTES_25
509.8
MONOCYTES_26
509.0
MONOCYTES_27
507.4
MONOCYTES_28
503.1
MONOCYTES_29
499.9
MONOCYTES_30
499.7
MONOCYTES_31
499.0
MONOCYTES_32
497.0
MONOCYTES_33
496.2
MONOCYTES_34
495.5
MONOCYTES_35
492.9
MONOCYTES_36
492.7
MONOCYTES_37
489.0
MONOCYTES_38
486.7
MONOCYTES_39
483.7
MONOCYTES_40
482.1
MONOCYTES_41
481.2
MONOCYTES_42
481.2
MONOCYTES_43
481.0
MONOCYTES_44
475.0
MONOCYTES_45
468.7
MONOCYTES_46
466.4
MONOCYTES_47
466.4
MONOCYTES_48
465.8
MONOCYTES_49
465.4
MONOCYTES_50
462.5
MONOCYTES_51
461.9
MONOCYTES_52
460.5
MONOCYTES_53
460.2
MONOCYTES_54
458.4
MONOCYTES_55
458.1
MONOCYTES_56
457.7
MONOCYTES_57
456.7
MONOCYTES_58
453.7
MONOCYTES_59
453.6
MONOCYTES_60
453.1
MONOCYTES_61
452.5
MONOCYTES_62
452.3
MONOCYTES_63
451.8
MONOCYTES_64
451.1
MONOCYTES_65
450.9
MONOCYTES_66
448.2
MONOCYTES_67
446.9
MONOCYTES_68
446.5
MONOCYTES_69
446.3
MONOCYTES_70
446.0
MONOCYTES_71
445.4
MONOCYTES_72
445.3
MONOCYTES_73
444.7
MONOCYTES_74
442.8
MONOCYTES_75
437.4
MONOCYTES_76
431.4
MONOCYTES_77
429.7
MONOCYTES_78
429.1
MONOCYTES_79
427.1
MONOCYTES_80
421.1
MONOCYTES_81
419.9
MONOCYTES_82
417.1
MONOCYTES_83
415.4
MONOCYTES_84
406.4
MONOCYTES_85
405.6
MONOCYTES_86
404.9
MONOCYTES_87
393.9
MONOCYTES_88
388.1
MONOCYTES_89
386.6
MONOCYTES_90
366.4
MONOCYTES_91
323.7
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Non-classical monocyte TPM: 349.5
Samples: 90
Max TPM: 493.6
Min TPM: 224.6
M2_1
493.6
M2_2
481.6
M2_3
435.2
M2_4
435.2
M2_5
433.3
M2_6
430.6
M2_7
429.4
M2_8
422.7
M2_9
416.7
M2_10
413.6
M2_11
410.8
M2_12
406.2
M2_13
404.5
M2_14
396.7
M2_15
395.5
M2_16
394.7
M2_17
394.4
M2_18
393.9
M2_19
392.5
M2_20
389.5
M2_21
387.3
M2_22
385.5
M2_23
382.5
M2_24
381.6
M2_25
380.8
M2_26
380.6
M2_27
378.5
M2_28
374.0
M2_29
372.7
M2_30
371.9
M2_31
365.3
M2_32
364.1
M2_33
360.2
M2_34
359.3
M2_35
359.1
M2_36
358.9
M2_37
352.2
M2_38
351.3
M2_39
350.4
M2_40
349.2
M2_41
348.4
M2_42
347.5
M2_43
347.5
M2_44
345.5
M2_45
344.7
M2_46
342.8
M2_47
341.7
M2_48
340.6
M2_49
339.4
M2_50
338.9
M2_51
337.2
M2_52
336.9
M2_53
336.4
M2_54
335.5
M2_55
335.3
M2_56
332.8
M2_57
332.6
M2_58
330.5
M2_59
328.4
M2_60
323.0
M2_61
322.8
M2_62
319.9
M2_63
319.6
M2_64
318.9
M2_65
317.4
M2_66
316.2
M2_67
315.3
M2_68
313.2
M2_69
311.5
M2_70
309.7
M2_71
308.7
M2_72
307.5
M2_73
302.8
M2_74
302.1
M2_75
302.1
M2_76
300.7
M2_77
300.0
M2_78
299.5
M2_79
298.1
M2_80
296.7
M2_81
296.3
M2_82
295.6
M2_83
288.7
M2_84
288.6
M2_85
287.6
M2_86
285.4
M2_87
282.8
M2_88
272.9
M2_89
244.7
M2_90
224.6
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