A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.0
nTPM
Monaco:
101.1
nTPM
Schmiedel:
52.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.0
HPA sample
nTPM
Memory B-cell nTPM: 24.0
Samples: 6
Max nTPM: 30.3
Min nTPM: 17.6
P10809_1017
21.3
P10809_1025
28.9
P10809_1044
23.4
P10809_1063
22.5
P10809_1092
17.6
P10809_1105
30.3
Naive B-cell nTPM: 17.1
Samples: 6
Max nTPM: 23.1
Min nTPM: 12.2
P10809_1011
12.2
P10809_1029
17.2
P10809_1048
12.4
P10809_1067
18.7
P10809_1091
19.1
P10809_1104
23.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 53.9
Samples: 4
Max nTPM: 70.8
Min nTPM: 47.4
RHH5310_R3677
48.4
RHH5218_R3590
47.4
RHH5247_R3619
70.8
RHH5276_R3648
49.1
Naive B-cell nTPM: 59.9
Samples: 4
Max nTPM: 78.8
Min nTPM: 47.6
RHH5308_R3675
47.6
RHH5216_R3588
56.9
RHH5245_R3617
78.8
RHH5274_R3646
56.2
Non-switched memory B-cell nTPM: 68.6
Samples: 4
Max nTPM: 86.1
Min nTPM: 54.3
RHH5309_R3676
68.3
RHH5217_R3589
86.1
RHH5246_R3618
65.6
RHH5275_R3647
54.3
Plasmablast nTPM: 101.1
Samples: 4
Max nTPM: 123.7
Min nTPM: 89.5
RHH5312_R3679
123.7
RHH5220_R3592
92.9
RHH5249_R3621
98.3
RHH5278_R3650
89.5
Switched memory B-cell nTPM: 70.7
Samples: 4
Max nTPM: 76.8
Min nTPM: 60.5
RHH5311_R3678
76.8
RHH5219_R3591
60.5
RHH5248_R3620
72.6
RHH5277_R3649
73.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.2
Schmiedel sample id
TPM
Naive B-cell TPM: 52.2
Samples: 91
Max TPM: 95.1
Min TPM: 34.2
B_CELL_NAIVE_1
95.1
B_CELL_NAIVE_2
76.4
B_CELL_NAIVE_3
75.9
B_CELL_NAIVE_4
75.3
B_CELL_NAIVE_5
74.2
B_CELL_NAIVE_6
69.3
B_CELL_NAIVE_7
68.8
B_CELL_NAIVE_8
68.6
B_CELL_NAIVE_9
66.5
B_CELL_NAIVE_10
65.6
B_CELL_NAIVE_11
64.1
B_CELL_NAIVE_12
64.0
B_CELL_NAIVE_13
59.9
B_CELL_NAIVE_14
59.8
B_CELL_NAIVE_15
59.1
B_CELL_NAIVE_16
58.8
B_CELL_NAIVE_17
58.2
B_CELL_NAIVE_18
57.0
B_CELL_NAIVE_19
57.0
B_CELL_NAIVE_20
56.5
B_CELL_NAIVE_21
55.7
B_CELL_NAIVE_22
55.5
B_CELL_NAIVE_23
55.4
B_CELL_NAIVE_24
55.3
B_CELL_NAIVE_25
54.8
B_CELL_NAIVE_26
54.8
B_CELL_NAIVE_27
54.2
B_CELL_NAIVE_28
53.8
B_CELL_NAIVE_29
53.3
B_CELL_NAIVE_30
53.1
B_CELL_NAIVE_31
52.9
B_CELL_NAIVE_32
52.7
B_CELL_NAIVE_33
52.6
B_CELL_NAIVE_34
52.6
B_CELL_NAIVE_35
52.4
B_CELL_NAIVE_36
52.2
B_CELL_NAIVE_37
52.2
B_CELL_NAIVE_38
52.2
B_CELL_NAIVE_39
51.8
B_CELL_NAIVE_40
51.6
B_CELL_NAIVE_41
51.6
B_CELL_NAIVE_42
51.3
B_CELL_NAIVE_43
51.0
B_CELL_NAIVE_44
50.9
B_CELL_NAIVE_45
50.8
B_CELL_NAIVE_46
50.4
B_CELL_NAIVE_47
50.1
B_CELL_NAIVE_48
50.0
B_CELL_NAIVE_49
49.8
B_CELL_NAIVE_50
49.8
B_CELL_NAIVE_51
49.3
B_CELL_NAIVE_52
49.2
B_CELL_NAIVE_53
49.2
B_CELL_NAIVE_54
49.2
B_CELL_NAIVE_55
49.1
B_CELL_NAIVE_56
49.1
B_CELL_NAIVE_57
48.8
B_CELL_NAIVE_58
48.8
B_CELL_NAIVE_59
48.7
B_CELL_NAIVE_60
48.7
B_CELL_NAIVE_61
48.6
B_CELL_NAIVE_62
48.0
B_CELL_NAIVE_63
47.7
B_CELL_NAIVE_64
47.6
B_CELL_NAIVE_65
47.2
B_CELL_NAIVE_66
46.5
B_CELL_NAIVE_67
46.3
B_CELL_NAIVE_68
46.1
B_CELL_NAIVE_69
46.0
B_CELL_NAIVE_70
45.9
B_CELL_NAIVE_71
45.4
B_CELL_NAIVE_72
45.3
B_CELL_NAIVE_73
45.3
B_CELL_NAIVE_74
45.1
B_CELL_NAIVE_75
44.8
B_CELL_NAIVE_76
44.0
B_CELL_NAIVE_77
43.7
B_CELL_NAIVE_78
43.7
B_CELL_NAIVE_79
43.5
B_CELL_NAIVE_80
43.4
B_CELL_NAIVE_81
43.1
B_CELL_NAIVE_82
43.0
B_CELL_NAIVE_83
42.8
B_CELL_NAIVE_84
42.4
B_CELL_NAIVE_85
42.3
B_CELL_NAIVE_86
42.0
B_CELL_NAIVE_87
41.6
B_CELL_NAIVE_88
40.4
B_CELL_NAIVE_89
37.9
B_CELL_NAIVE_90
34.4
B_CELL_NAIVE_91
34.2
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The Human Protein Atlas project is funded
