A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.6
nTPM
Monaco:
68.7
nTPM
Schmiedel:
41.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.6
HPA sample
nTPM
Classical monocyte nTPM: 17.5
Samples: 6
Max nTPM: 20.0
Min nTPM: 12.3
P10809_1003
12.3
P10809_1020
18.6
P10809_1039
20.0
P10809_1058
15.0
P10809_1080
19.6
P10809_1107
19.3
Intermediate monocyte nTPM: 24.9
Samples: 6
Max nTPM: 29.7
Min nTPM: 20.2
P10809_1004
21.0
P10809_1023
28.5
P10809_1042
22.3
P10809_1061
29.7
P10809_1081
20.2
P10809_1108
27.5
Non-classical monocyte nTPM: 28.6
Samples: 5
Max nTPM: 45.9
Min nTPM: 20.1
P10809_1005
23.2
P10809_1053
25.7
P10809_1072
45.9
P10809_1082
20.1
P10809_1109
28.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.7
Monaco sample
nTPM
Classical monocyte nTPM: 56.1
Samples: 4
Max nTPM: 66.6
Min nTPM: 50.6
RHH5313_R3680
51.6
RHH5221_R3593
55.4
RHH5250_R3622
66.6
RHH5279_R3651
50.6
Intermediate monocyte nTPM: 68.8
Samples: 4
Max nTPM: 73.1
Min nTPM: 64.5
RHH5314_R3681
64.8
RHH5222_R3594
73.1
RHH5251_R3623
64.5
RHH5280_R3652
72.6
Non-classical monocyte nTPM: 60.2
Samples: 4
Max nTPM: 70.4
Min nTPM: 53.2
RHH5315_R3682
63.5
RHH5223_R3595
53.7
RHH5252_R3624
70.4
RHH5281_R3653
53.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.3
Schmiedel sample id
TPM
Classical monocyte TPM: 27.1
Samples: 91
Max TPM: 37.6
Min TPM: 18.3
MONOCYTES_1
37.6
MONOCYTES_2
37.4
MONOCYTES_3
37.4
MONOCYTES_4
36.8
MONOCYTES_5
36.3
MONOCYTES_6
36.1
MONOCYTES_7
35.4
MONOCYTES_8
34.4
MONOCYTES_9
33.8
MONOCYTES_10
32.9
MONOCYTES_11
32.7
MONOCYTES_12
32.5
MONOCYTES_13
32.5
MONOCYTES_14
32.5
MONOCYTES_15
32.3
MONOCYTES_16
32.1
MONOCYTES_17
31.8
MONOCYTES_18
31.2
MONOCYTES_19
31.1
MONOCYTES_20
30.8
MONOCYTES_21
30.7
MONOCYTES_22
30.3
MONOCYTES_23
30.3
MONOCYTES_24
29.6
MONOCYTES_25
29.6
MONOCYTES_26
29.6
MONOCYTES_27
29.6
MONOCYTES_28
29.2
MONOCYTES_29
29.1
MONOCYTES_30
29.0
MONOCYTES_31
28.9
MONOCYTES_32
28.7
MONOCYTES_33
28.6
MONOCYTES_34
28.5
MONOCYTES_35
28.4
MONOCYTES_36
28.3
MONOCYTES_37
28.3
MONOCYTES_38
28.3
MONOCYTES_39
27.5
MONOCYTES_40
27.5
MONOCYTES_41
27.4
MONOCYTES_42
27.2
MONOCYTES_43
27.0
MONOCYTES_44
26.6
MONOCYTES_45
26.4
MONOCYTES_46
26.3
MONOCYTES_47
26.1
MONOCYTES_48
25.9
MONOCYTES_49
25.8
MONOCYTES_50
25.7
MONOCYTES_51
25.7
MONOCYTES_52
25.5
MONOCYTES_53
25.5
MONOCYTES_54
25.3
MONOCYTES_55
25.3
MONOCYTES_56
25.2
MONOCYTES_57
24.8
MONOCYTES_58
24.7
MONOCYTES_59
24.7
MONOCYTES_60
24.5
MONOCYTES_61
24.5
MONOCYTES_62
24.5
MONOCYTES_63
24.4
MONOCYTES_64
24.2
MONOCYTES_65
24.1
MONOCYTES_66
23.8
MONOCYTES_67
23.7
MONOCYTES_68
23.7
MONOCYTES_69
23.7
MONOCYTES_70
23.6
MONOCYTES_71
23.3
MONOCYTES_72
23.2
MONOCYTES_73
22.7
MONOCYTES_74
22.6
MONOCYTES_75
22.6
MONOCYTES_76
22.4
MONOCYTES_77
22.0
MONOCYTES_78
21.9
MONOCYTES_79
21.9
MONOCYTES_80
21.6
MONOCYTES_81
21.6
MONOCYTES_82
21.4
MONOCYTES_83
21.3
MONOCYTES_84
21.3
MONOCYTES_85
20.9
MONOCYTES_86
20.7
MONOCYTES_87
20.6
MONOCYTES_88
20.0
MONOCYTES_89
19.7
MONOCYTES_90
18.6
MONOCYTES_91
18.3
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Non-classical monocyte TPM: 41.3
Samples: 90
Max TPM: 64.1
Min TPM: 27.5
M2_1
64.1
M2_2
59.1
M2_3
58.2
M2_4
57.3
M2_5
55.4
M2_6
55.4
M2_7
53.4
M2_8
53.3
M2_9
50.1
M2_10
49.9
M2_11
49.8
M2_12
49.1
M2_13
49.0
M2_14
48.7
M2_15
48.4
M2_16
48.3
M2_17
48.2
M2_18
47.7
M2_19
47.5
M2_20
46.8
M2_21
46.4
M2_22
46.3
M2_23
46.1
M2_24
46.1
M2_25
45.5
M2_26
45.2
M2_27
45.1
M2_28
44.9
M2_29
44.7
M2_30
44.4
M2_31
44.2
M2_32
43.9
M2_33
43.8
M2_34
43.0
M2_35
42.6
M2_36
42.4
M2_37
42.2
M2_38
42.1
M2_39
41.7
M2_40
41.2
M2_41
40.8
M2_42
40.4
M2_43
40.4
M2_44
40.3
M2_45
40.2
M2_46
39.5
M2_47
39.3
M2_48
39.3
M2_49
39.1
M2_50
39.0
M2_51
38.8
M2_52
38.7
M2_53
38.7
M2_54
38.2
M2_55
38.2
M2_56
37.5
M2_57
37.2
M2_58
37.2
M2_59
37.1
M2_60
36.8
M2_61
36.6
M2_62
36.5
M2_63
36.3
M2_64
36.1
M2_65
36.0
M2_66
36.0
M2_67
35.9
M2_68
35.6
M2_69
35.4
M2_70
35.4
M2_71
35.3
M2_72
35.3
M2_73
35.2
M2_74
34.9
M2_75
34.9
M2_76
34.8
M2_77
33.8
M2_78
33.8
M2_79
33.6
M2_80
33.2
M2_81
32.7
M2_82
32.6
M2_83
32.2
M2_84
31.9
M2_85
31.7
M2_86
31.4
M2_87
30.9
M2_88
30.5
M2_89
30.3
M2_90
27.5
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