A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.2
nTPM
Monaco:
72.3
nTPM
Schmiedel:
59.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.2
HPA sample
nTPM
NK-cell nTPM: 37.2
Samples: 6
Max nTPM: 64.0
Min nTPM: 28.0
P10809_1013
28.0
P10809_1033
30.6
P10809_1052
33.3
P10809_1071
28.4
P10809_1093
64.0
P10809_1103
38.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.3
Monaco sample
nTPM
NK-cell nTPM: 72.3
Samples: 4
Max nTPM: 86.1
Min nTPM: 63.0
RHH5316_R3683
68.8
RHH5224_R3596
86.1
RHH5253_R3625
63.0
RHH5282_R3654
71.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.5
Schmiedel sample id
TPM
NK-cell TPM: 59.5
Samples: 90
Max TPM: 94.8
Min TPM: 32.1
NK_1
94.8
NK_2
93.8
NK_3
93.4
NK_4
92.8
NK_5
91.6
NK_6
87.0
NK_7
85.8
NK_8
85.1
NK_9
84.3
NK_10
79.1
NK_11
79.1
NK_12
77.8
NK_13
77.6
NK_14
76.7
NK_15
75.0
NK_16
74.5
NK_17
72.6
NK_18
71.8
NK_19
70.5
NK_20
69.4
NK_21
69.0
NK_22
68.7
NK_23
68.6
NK_24
68.4
NK_25
67.5
NK_26
67.1
NK_27
65.9
NK_28
65.0
NK_29
65.0
NK_30
64.4
NK_31
63.9
NK_32
63.8
NK_33
62.9
NK_34
61.9
NK_35
61.9
NK_36
61.6
NK_37
61.2
NK_38
61.1
NK_39
60.8
NK_40
60.3
NK_41
59.8
NK_42
59.6
NK_43
59.2
NK_44
59.0
NK_45
57.9
NK_46
57.1
NK_47
56.8
NK_48
56.0
NK_49
55.8
NK_50
55.4
NK_51
55.1
NK_52
54.3
NK_53
54.1
NK_54
54.0
NK_55
53.8
NK_56
52.9
NK_57
52.7
NK_58
52.6
NK_59
52.5
NK_60
52.3
NK_61
52.2
NK_62
52.2
NK_63
51.6
NK_64
50.9
NK_65
50.8
NK_66
50.2
NK_67
49.3
NK_68
49.2
NK_69
48.7
NK_70
48.6
NK_71
47.2
NK_72
47.2
NK_73
46.6
NK_74
46.4
NK_75
46.3
NK_76
44.6
NK_77
43.9
NK_78
43.9
NK_79
43.7
NK_80
42.6
NK_81
39.6
NK_82
39.4
NK_83
39.2
NK_84
38.7
NK_85
37.2
NK_86
36.9
NK_87
36.2
NK_88
35.7
NK_89
34.9
NK_90
32.1
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