MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.3 nTPM
HPA Brain:119.9 nTPM
GTEx:30.3 nTPM
FANTOM5:121.3 Scaled Tags Per Million
Pig:141.4 nTPM
Mouse:231.5 nTPM
Allen mouse:13.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 119.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.1
2411 Female, age 72, unknown 109.7
1827 Male, age 72, unknown 96.9
1870 Female, age 42, unknown 94.8
2219 Male, age 76, both hemispheres 91.4
1833 Male, age 53, unknown 85.3
1830 Male, age 51, unknown 79.7
2019 Male, age 18, unknown 77.8
2666 Male, age 74, left hemisphere 75.1
2586 Male, age 75, left hemisphere 71.7
2828 Female, age 72, unknown 68.7
Dorsal raphe nucleus
nTPM: 90.6
2298 Female, age 72, unknown 108.5
2750 Male, age 76, both hemispheres 97.5
2047 Male, age 72, unknown 93.4
1828 Male, age 53, unknown 83.4
2016 Female, age 72, unknown 70.3
Inferior colliculus
nTPM: 93.0
2097 Female, age 72, unknown 103.2
2849 Male, age 72, unknown 99.1
1848 Female, age 42, unknown 93.1
1890 Male, age 53, unknown 76.7
Median raphe nucleus
nTPM: 119.9
2220 Male, age 76, midline 119.9
Periaquaductal grey, anterior
nTPM: 99.9
1947 Male, age 18, unknown 109.3
2502 Female, age 75, unknown 102.9
1795 Male, age 51, unknown 87.6
Periaquaductal grey, dorsal
nTPM: 84.1
1840 Male, age 53, unknown 103.0
2850 Male, age 76, both hemispheres 81.3
1831 Male, age 72, unknown 76.6
2464 Female, age 72, unknown 75.5
Periaquaductal grey, lateral
nTPM: 80.5
2272 Male, age 74, both hemispheres 85.4
2140 Male, age 76, both hemispheres 78.1
2053 Male, age 18, unknown 77.9
Pretectal area
nTPM: 88.7
2224 Female, age 72, unknown 109.2
1816 Male, age 51, unknown 99.2
1944 Female, age 72, unknown 96.9
2825 Male, age 18, unknown 94.9
1817 Female, age 42, unknown 93.3
2007 Male, age 72, unknown 93.1
2273 Male, age 74, both hemispheres 84.9
2667 Female, age 75, unknown 84.1
1815 Male, age 53, unknown 80.4
2316 Male, age 76, right hemisphere 73.3
2407 Male, age 75, both hemispheres 66.8
Red nucleus
nTPM: 71.2
1821 Female, age 72, unknown 86.4
2725 Female, age 75, unknown 80.2
2584 Male, age 75, left hemisphere 75.9
1954 Female, age 42, unknown 74.9
2785 Male, age 18, unknown 71.1
2227 Male, age 72, unknown 70.0
2503 Female, age 72, unknown 69.0
2769 Male, age 72, unknown 68.1
1904 Male, age 53, unknown 65.8
1865 Male, age 51, unknown 65.0
2588 Male, age 74, left hemisphere 64.7
2823 Male, age 76, right hemisphere 63.6
Substantia nigra
nTPM: 96.2
1916 Female, age 42, unknown 121.5
2241 Male, age 72, unknown 119.1
1941 Male, age 53, unknown 111.7
2409 Female, age 72, unknown 102.6
1851 Male, age 51, unknown 98.0
1889 Female, age 72, unknown 94.5
2583 Male, age 75, right hemisphere 80.8
2665 Male, age 74, both hemispheres 78.9
2699 Male, age 18, unknown 78.6
2590 Female, age 75, unknown 76.3
Superior colliculus
nTPM: 81.4
1796 Male, age 53, unknown 92.4
1895 Male, age 76, right hemisphere 92.3
2587 Male, age 74, left hemisphere 91.4
2261 Male, age 18, unknown 90.9
1839 Male, age 51, unknown 90.8
2668 Female, age 75, unknown 89.1
2087 Female, age 72, unknown 83.0
1913 Female, age 42, unknown 66.7
2664 Male, age 75, both hemispheres 63.6
1995 Male, age 72, unknown 53.9
Ventral tegmental area
nTPM: 97.3
2218 Male, age 76, both hemispheres 105.7
1915 Female, age 42, unknown 100.6
2410 Female, age 72, unknown 97.5
1942 Male, age 51, unknown 96.3
2223 Female, age 72, unknown 96.3
2021 Male, age 53, unknown 87.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.3
Samples: 183

Max nTPM: 79.0
Min nTPM: 14.0
Std nTPM: 13.6
Median nTPM: 25.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 79.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 73.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 72.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 67.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 64.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 63.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 61.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 60.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 59.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 121.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.3
FF:10158-103A5 76 years, female 121.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 141.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 119.4
Samples: 4

Max nTPM: 161.5
Min nTPM: 64.9
Sample A Female 161.5
Sample B Female 99.8
Sample C Male 151.4
Sample D Male 64.9
Midbrain
nTPM: 141.4
Samples: 4

Max nTPM: 175.3
Min nTPM: 103.4
Sample A Female 103.4
Sample B Female 122.5
Sample C Male 164.3
Sample D Male 175.3
Periaqueductal gray
nTPM: 121.2
Samples: 3

Max nTPM: 147.2
Min nTPM: 104.9
Sample B Female 104.9
Sample C Male 147.2
Sample D Male 111.4
Superior colliculi
nTPM: 134.4
Samples: 4

Max nTPM: 159.9
Min nTPM: 83.2
Sample A Female 159.9
Sample B Female 83.2
Sample C Male 149.4
Sample D Male 144.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 231.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 231.5
Samples: 4

Max nTPM: 240.6
Min nTPM: 213.7
Sample A Male 213.7
Sample B Male 237.2
Sample C Female 240.6
Sample D Female 234.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.4
75198076 Antisense, RP_060502_01_F07, Mouse strain C57BL/6J (56 days, male) 13.4

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